Conserved Protein Domain Family
SQR_TypeA_SdhC_like

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cd03501: SQR_TypeA_SdhC_like 
Succinate:quinone oxidoreductase (SQR) Type A subfamily, Succinate dehydrogenase C (SdhC)-like subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Members of this subfamily reduce low potential quinones such as menaquinone and thermoplasmaquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are similar to the Thermoplasma acidophilum SQR and are classified as Type A because they contain two transmembrane subunits as well as two heme groups. Although there are no structures available for this subfamily, the presence of two hemes has been proven spectroscopically for T. acidophilum. The two membrane anchor subunits are similar to the SdhD and SdhC subunits of bacterial SQRs, which contain heme and quinone binding sites. The two-electron oxidation of succinate in the flavoprotein active site is coupled to the two-electron reduction of quinone in the membrane anchor subunits via electron transport through FAD and three iron-sulfur centers. The reversible reduction of quinone is an essential feature of respiration, allowing transfer of electrons between respiratory complexes.
Statistics
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PSSM-Id: 239581
Aligned: 15 rows
Threshold Bit Score: 90.0228
Created: 16-Feb-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:putative proximal heme binding site [chemical binding site]
Evidence:
  • Comment:Based on similarity to Type B SQRs, and the proximal heme binding site of Wolinella succinogenes fumarate reductase transmembrane subunit.
  • Comment:Members of this subfamily may contain two heme groups, one proximal and the other distal to the [3Fe-4S] cluster of the iron-sulfur subunit. Two histidines, one from each membrane anchor subunit, coordinate with iron in each heme. The proximal heme is also referred to as the high-potential heme.
  • Comment:Heme is essential for functional assembly and structural stability of the transmembrane subunits.
  • Citation:PMID 7669765
  • Citation:PMID 1879426

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             ##  #                                                     ##  #           
BAD71279      8 QWAFYLHRISGIGILVFLVLHVLNIASAmw-gPEVSNAFMKFYH---QPVFQLGLLVLIAGVLYHGFNGLRIILMDFTSW 83  Thermus thermoph...
YP_444632    45 MFAWMMHRLTGVGLVVYLIVHIWGLTALt--dPETFNALIAKYH---SPIFKVGEFALLVAVAYHAMNGLRLVLIDFLGW 119 Salinibacter rub...
BAD41622     27 MWSHVLHRITGVAITVFLLLHIWEITSVvrggAAGFDTKMAGMA---AKLWVVGEWLLFLALVFHAINGIRLILLDLGWG 103 Symbiobacterium ...
ZP_00592117  32 MAAWVLHRLTGLLLVIYLPLHVMGLRSLs--dPVRFEKYVTLYR---NPLFKMAEVALLAVVAFHAFNGIRILLQDLYFR 106 Prosthecochloris...
BAD55794     22 MWSWALHRITGVTIFFFLFVHVLDTALVrv-sPEVYDEAIETYK---NPLVALMEMGLVVCVLFHALNGVRVILVDFWSQ 97  Nocardia farcini...
ZP_00412025  16 MWSWVGHRITGVVIFFFLLVHVLDTSLVrv-sPEAYTAVIGAYK---NPLMALGETGLVAAIVFHAFNGLRIIAVDFWKK 91  Arthrobacter sp....
AAF10527      8 QWAFLLHRLSGLAILLYLMLHVFSIGSVil-gEEFYMRIHHVYD---LGIFRVGLIAVVAGVVYHAFNGLRIIVMDFAGA 83  Deinococcus radi...
ABB16150     21 RYLYTLHRISGLGLIIYLLLHIVVTSFRlg-gPDAWAKAMGTVD---SPIFKFGEFLVVVAGVFHGLNGLRLILTEFGYF 96  Carboxydothermus...
CAA50263     25 YFAFAFHRLSGLVILFYLYLHYAVLSNLlr-gQATYNAIVKSITygpYDSFLALDFLLALVIFYHGANGVRLALNEFGIG 103 Thermoplasma aci...
BAA79932     35 RLAFHMHRITGVITAFFIFFHIISTSAParsgWEAWLEEVANLDg--ITPISILFYIAMGAVLFHGLNGVRLLLVEALAL 112 Aeropyrum pernix K1
Feature 1                                                
BAD71279     84 gv----------------rYQKQLWYAAWVLFVVFYLPFLV 108 Thermus thermophilus HB8
YP_444632   120 s-----------------pKQKKLFWTLGAVTAVIIAVGGW 143 Salinibacter ruber DSM 13855
BAD41622    104 v-----------------rEQKRNFWVVFILSAVIITIGSY 127 Symbiobacterium thermophilum IAM 14863
ZP_00592117 107 s-----------------dTQRPLFYAVVVLTVLVTAVVGY 130 Prosthecochloris aestuarii DSM 271
BAD55794     98 gp----------------rFQRQMLWIVLAIWIVASAAGVG 122 Nocardia farcinica IFM 10152
ZP_00412025  92 ga----------------kYQRQMLWTVLVLWVIVMVGFSI 116 Arthrobacter sp. FB24
AAF10527     84 gv----------------aYQRQMWYGVLAITALATLYAAW 108 Deinococcus radiodurans R1
ABB16150     97 igkperqe---ypykystlKQRPLMYFLMILALVGIVISVY 134 Carboxydothermus hydrogenoformans Z-2901
CAA50263    104 m-----------------qHHKALFFTFEIIAMILLGLFDY 127 Thermoplasma acidophilum
BAA79932    113 gigrpekpkppyiapslrgFQRRLIHIVFALWIILWIALGY 153 Aeropyrum pernix K1

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