Conserved Protein Domain Family
ARID_ARID5A

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cd16884: ARID_ARID5A 
ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 5A (ARID5A) and similar proteins
ARID5A, also called modulator recognition factor 1 (MRF-1), is an estrogen receptor alpha (ER alpha)-interacting protein that is expressed abundantly in cardiovascular tissues and suppresses ER alpha-induced transactivation. It also associates with thyroid receptor alpha (TR alpha) and retinoid X receptor alpha (RXR alpha) in a ligand-dependent manner, and with ER beta, androgen receptor (AR), and the retinoic acid receptor (RAR) in a ligand-independent manner. ARID5A functions as a negative regulator of RORgamma-induced Th17 cell differentiation and may be involved in the pathogenesis of rheumatoid arthritis (RA). Moreover, it is an important transcriptional partner of the transcription factor sex determining region Y (SRY)-box protein 9 (Sox9) in stimulation of chondrocyte-specific transcription. Meanwhile, ARID5A plays an important role in promotion of inflammatory processes and autoimmune diseases. It works as a unique RNA binding protein, which stabilizes interleukin-6 (IL-6) but not tumor necrosis factor-alpha (TNF-alpha) mRNA through binding to the 3' untranslated region (UTR) of IL-6 mRNA, and inhibits the destabilizing effect of regnase-1 on IL-6 mRNA. ARID5A contains an AT-rich DNA-interacting domain (ARID, also known as BRIGHT).
Statistics
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PSSM-Id: 350648
Aligned: 5 rows
Threshold Bit Score: 190.598
Created: 12-Sep-2013
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative DNA
Feature 1:putative DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:Based on the structure evidence that Drosophila melanogaster Dead Ringer (1KQQ) binds DNA through its ARID domain.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                             #######                        # ##  #          # ### #    
Q03989        57 EEQAFLVSLYKFMKERHtPIERVPHLGFKQINLWKIYKAVEKLGAYElVTGRRLWKNVYDELGGsPGSTSAATCTRRHYE 136 human
AAI58207      70 EERTFITNLYCFMKERNtPIERIPHLGFKQINLWKIYKAVETLGGYDaVTARRQWKNVYDELGGsPGSTSAATCTRRHYE 149 zebrafish
XP_005234333  32 EEEAFLVSLYKFMKDRHtPIERIPHLGFKQINLWKIYKAVEKLGAYElVTGRRLWKNVYDELGGsPGSTSAATCTRRHYE 111 peregrine falcon
XP_007910615  65 EQQHFITNLYRFMKESNrPIERIPHLGFKQVNLWTMYRAVEKLGGYEaVTTNRLWKNIYDELGGnPGSTSAATCTRRHYE 144 elephant shark
XP_014343439 140 EEQLFLVNLYKFMKDRNtPIERIPHLGFKQINLWKIYKAVEKLGGYDlVTARRLWKNVYDELGGsPGSTSAATCTRRHYE 219 coelacanth
Feature 1               
Q03989       137 RLVLPYV 143 human
AAI58207     150 RLVLPFE 156 zebrafish
XP_005234333 112 RLVLPYV 118 peregrine falcon
XP_007910615 145 RLVLPYE 151 elephant shark
XP_014343439 220 RLVLPYV 226 coelacanth

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