3M1I,1K5D


Conserved Protein Domain Family
RanBD_RanBP1

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cd13179: RanBD_RanBP1 
Click on image for an interactive view with Cn3D
Ran-binding domain
RanBP1 interacts specifically with GTP-charged Ran. RanBP1 does not activate GTPase activity of Ran, but does markedly increase GTP hydrolysis by the RanGTPase-activating protein (RanGAP1). In both mammalian cells and in yeast, RanBP1 acts as a negative regulator of Regulator of chromosome condensation 1 (RCC1) by inhibiting RCC1-stimulated guanine nucleotide release from Ran. In addition to Ran, RanBP1 has been shown to interact with Exportin-1 and Importin subunit beta-1 which docks the NPC at the cytoplasmic side of the nuclear pore complex. RabBP1 contains a single RanBD. The RanBD is present in RanBD1, RanBD2, RanBD3, Nuc2, and Nuc50. Most of these proteins have a single RanBD, with the exception of RanBD2 which has 4 RanBDs. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity.
Statistics
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PSSM-Id: 270000
Aligned: 38 rows
Threshold Bit Score: 164.664
Created: 20-Jul-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
CRM1-RanBP1-R..Ran#RanBP1#Ra..
Conserved site includes 43 residues -Click on image for an interactive view with Cn3D
Feature 1:CRM1-RanBP1-RanGTP complex [polypeptide binding site]
Evidence:
  • Structure:3MII; Yeast RanBP1 RanBD forms a complex with CRM1and RanGTP, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                            ##  ###        #     # #           ######   #          # # #
3M1I_B        52 DIHFEPVVH---------LEKVDVKTMEEDEEVLYKVRAKLFRFDad-------aKEWKERGTGDCKFLKNKKTnKVRIL 115 baker's yeast
BAK00269      30 KVDFKPLVQ---------LKEVDVQSGEEDEDVLFKMRAKLFRFDkpqgkdkdapGQWKERGTGDVKFLQHKESkKIRLL 100 domesticated ba...
XP_002962499  27 GAQIAPIVR---------LEEVAVKTGEENEEVLLDMKARLYRYD----------QVWKERGTGVIKILKDKETnKTRVL 87  Selaginella moe...
ABK24143      32 GAQIAPIVK---------LEEIAVTTGEEEEDVLLDMKSKLYRFDkd-------gNQWKERGVGTVKLLKHKETtKVRLV 95  Sitka spruce
XP_001777183  38 GAQIAPIVT---------LQEVAVSTGEEDEDVLIDMKAKLYRFDke-------gTQWKERGVGQVKILEHKTTrKVRLL 101 Physcomitrella ...
XP_002955240  68 QAEFKPVVQ---------LEEVETKSGEEDEDALVELKCKLYRFDnd-------hQEWKERGLGLIKLLQHKENkKVRLL 131 Volvox carteri ...
EFN56683      80 KAEFKPIVQ---------LDEVEVSTGEEEEEALFDAKCKLYRYDnd-------aGEWKERGVGQGRILQHKENkKIRFL 143 Chlorella varia...
BAA97328      24 GAQVAPIVR---------LEEVAVTTGEEDEDAVLDLKSKMYRFDke-------gNQWKERGAGTVKLLKHKETgKVRLV 87  thale cress
XP_003081652  46 KAEFKPVVKle-----irEGAEAEKTGEEDEDILFEAKVKAYRYTd---------GEWKERGLGPIKLLEHKTSkKIRVL 111 Ostreococcus tauri
CAI39382      55 GEDYNPEQEvfvgegqatLPQLPVQTGEENDEEVAKFRAKIYRFAdaqwk-viymIYSQERGVGDMKFLKNKQTnKIRLL 133 Paramecium tetr...
Feature 1         ########  ###          ####  ### # #    #        # # # #                   
3M1I_B       116 MRRDKTLKICANHIIAp---EYTLKPNVgsDRSWVYACtADIAEGEAE--AFTFAIRFGSKENADKFKEEFEKAQE 186 baker's yeast
BAK00269     101 MRREKTYKLCANHFIYp---ELKLEPNVgsDRSWVWSCpMDYAEEPAT--PELFAIRFANVENATLFKQEFKKAQK 171 domesticated barley
XP_002962499  88 MRQNKTLKICANHYLVp---GMTLQEHAgsDKSWVWHA-MDYSDGEVK--KELLCVRFGSVENAQRFKDIYVERTE 157 Selaginella moellen...
ABK24143      96 MRQSKTLKICANHLIIp---PMSLQEHAgsDKSWVWHA-TDFSDGELK--EELFCIRLGSVENAKKFRDLFEEIAE 165 Sitka spruce
XP_001777183 102 MRQNRTLKICANHMVTa---ATQLQEHAgsDKSWIWHA-RDYSDGELK--EELFCMRFGSVESAQKFKDVYEAAQE 171 Physcomitrella pate...
XP_002955240 132 MRQEKTLKIRANHIVMp---GTKLQEHSgsDKAWVWSA-VDFADETQK--IELFAVRFGSVEKAQEFKKKFEESME 201 Volvox carteri f. n...
EFN56683     144 MRQDKTLKIRGNHIIMp---GTKVQEHGgsDKAMVWSC-VDFADESQR--MELFCIRFASPERAQQFQAAYHEAGK 213 Chlorella variabilis
BAA97328      88 MRQSKTLKICANHLISs---GMSVQEHSgnEKSCLWHA-TDFSDGELK--DELFCIRFASIENCKTFMEKFTEIAE 157 thale cress
XP_003081652 112 MRRDKTLKICANFYVQq---ESKVAEHAasEKACVFTT-VDCSDGDVApeLYNMCIKFGSSEKREAFTAAFEDAQK 183 Ostreococcus tauri
CAI39382     134 MRQDKTGKLIANHFITaqegFCKLSQLKtaDKSWIWTC-YDASDEQPK--VWQLCVRFISPEEVERFKTEFEKAYE 206 Paramecium tetraurelia

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