2Y7I,3TQL


Conserved Protein Domain Family
PBP2_Arg_STM4351

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cd13700: PBP2_Arg_STM4351 
Click on image for an interactive view with Cn3D
Substrate binding domain of arginine-specific ABC transporter; type 2 periplasmic-binding protein fold
This group includes domains similar to Escherichia coli arginine third transport system. STM4351 is the high arginine specific periplasmic-binding protein of ABC transport system. STM4351 belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.
Statistics
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PSSM-Id: 270418
Aligned: 10 rows
Threshold Bit Score: 322.857
Created: 15-Mar-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ligand binding
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Structure:3TQL; Coxiella burnetii amino acid-binding protein in complex with arginine, contacts at 4 A.
  • Structure:2Y7I; Salmonella typhimurium lysine/arginine/ornithine-binding protein in complex with arginine, contacts at 4 A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                         #  #                                     #                # ##    #     
2Y7I_A                  5 ARTLHFGTSaTYAPYEFVDAdNKIVGFDIDVANAVCKEMQAECSFTNQSFDSLIPSLRFKKFDAVIAgMDMTPKREqQVS 84  Salmon...
3TQL_A                  1 TDTIKFATEaTYPPYVYXGPsGQVEGFGADIVKAVCKQXQAVCTISNQPWDSLIPSLKLGKFDALFGgXNITTARQkEVD 80  Coxiel...
P30860                 20 AEKINFGVSaTYPPFESIGAnNEIVGFDIDLAKALCKQMQAECTFTNHAFDSLIPSLKFRKYDAVISgMDITPERSkQVS 99  Escher...
P30859                 20 AETIRFATEaSYPPFESIDAnNQIVGFDVDLAQALCKEIDATCTFSNQAFDSLIPSLKFRRVEAVMAgMDITPEREkQVL 99  Escher...
AEC16717               19 AQTITFAMEpTYPPFENTNEkGEIVGFDVDVANAICKEIKADCKFSSQSFDSLIAGLKFKRFDAAISaIDITPERAkQVS 98  Gallib...
P49618                 17 QAQDIIVMEpSYPPFEMTEEkGEIIGFDVDIANAICKEMNANCTFHSQPFDSLIQSLKQKQFDAAISgMGITEPRKkQVL 96  Mannhe...
AEG96774               46 AETLHFGTTtANPPFETVKGkGQATGFDIDLANALCKQMQAECKFTPQRFDTLIPALRFKKFDAIIAgIEVLPMREkQVA 125 Entero...
EFJ53504               37 AEKINFGVSaTYPPFESIGAnNEIVGFDIDLAKALCKQMQAECTFTNHAFDSLIPSLKFRKYDAVISgMDITPERSkQVS 116 Escher...
REF_mgcchina:SFV_0845  20 AEKINFGVSaTYPPFESIGAnNEIVGFDIDLAKALCKQMQAECTFTNHAFDSLIPSLKFRKYDAVISgMDITPERSkQVS 99  Shigel...
EDV63480               20 AEKINFGVSaTYPPFESIGAnNEIVGFDIDLAKALCKQMQAECTFTNHAFDSLIPSLKFRKYDAVISgMDITPERRkQVS 99  Escher...
Feature 1                                                    #  ###                                     # 
2Y7I_A                 85 FSQPYYEG-LSAVVVTrkgayht-fadlkgkKVGLENGTTHQRYLQDKQqa-iTPVAYDsYLNAFTDLKNNRLEGVFGDv 161 Salmon...
3TQL_A                 81 FTDPYYTN-SVSFIADkntpltlskqglkgkIIGVQGGTTFDSYLQDSFgnsiTIQRYPsEEDALXDLTSGRVDAVVGDt 159 Coxiel...
P30860                100 FTTPYYEN-SAVVIAKkdtyktf--adlkgkRIGMENGTTHQKYIQDQHpe-vKTVSYDsYQNAFIDLKNGRIDGVFGDt 175 Escher...
P30859                100 FTTPYYDN-SALFVGQqgkytsv--dqlkgkKVGVQNGTTHQKFIMDKHpe-iTTVPYDsYQNAKLDLQNGRIDGVFGDt 175 Escher...
AEC16717               99 FSDPYYDS-SASFVAAkegit-----lenakNVGVQNGTTFQQYIAAKAkq-ySSKPYStLQNAILDLKNGRIDIIFGDt 171 Gallib...
P49618                 97 FSEPYFPS-SAAFIAKkdtdf------akvkTIGVQNGTTYQHYLAKEKke-yNVKSYAsYQNAILDVQNGRIDAIFGDv 168 Mannhe...
AEG96774              126 FSQPYRQElSGVVVTAkdaahgf--adlqgkKLAVVKGSVHQRYLRDKQkg-iQTVAFGsDSDALAALKSGEVDGAIGDl 202 Entero...
EFJ53504              117 FTTPYYEN-SAVVIAKkdtyktf--adlkgkRIGMENGTTHQKYIQDQHpe-vKTVSYDsYQNAFIDLKNGRIDGVFGDt 192 Escher...
REF_mgcchina:SFV_0845 100 FTTPYYEN-SAVVISKkdtyktf--adlkgkRIGMENGTTHQKYIQDQHpe-vKTVSYDsYQNAFIDLKNGRIDGVFGDt 175 Shigel...
EDV63480              100 FTTPYYEN-SAVVIAKkdtyktf--adlkgkRIGMENGTTHQKYIQDQHpe-vKTVSYDsYQNAFIDLKNGRIDGVFGDt 175 Escher...
Feature 1                                                                                     
2Y7I_A                162 AAIGKWLkn--nPDYAIMDERAsdpdYYGKGLGIAVRKDNdALLQEINAALDKVKaSPEYAQMQEKWF 227 Salmonella enteric...
3TQL_A                160 PLIKQWLkqngrREYVLIGKPVndpnYFGKGVGIAVKKGNqALLLKLNKALAAIKaNGVYAAIVQKYF 227 Coxiella burnetii
P30860                176 AVVNEWLkt--nPQLGVATEKVtdpqYFGTGLGIAVRPDNkALLEKLNNALAAIKaDGTYQKISDQWF 241 Escherichia coli M...
P30859                176 AVVTEWLkd--nPKLAAVGDKVtdkdYFGTGLGIAVRQGNtELQQKLNTALEKVKkDGTYETIYNKWF 241 Escherichia coli HS
AEC16717              172 AVLAEWIks--dKAVHFVGDKVtdpeYFGTGLGIAVNKKNtELLGQLNQGLKAIKaNGEYQKIYDKWM 237 Gallibacterium ana...
P49618                169 PVLAEMArk--hEGLDFVGEKInnpnYFGDGLGIATHLKNqVLVDQFNAALKTIKeNGEYQKIYDKWM 234 Mannheimia haemoly...
AEG96774              203 ATMDQWLae--nPDYAEMKERAtdpaYYGKQYAIAVRKDDpELLKQINDALEVVKaSPEFQQMEQKWF 268 Enterobacter aerog...
EFJ53504              193 AVVNEWLkt--nPQLGVATEKVtdpqYFGTGLGIAVRPDNkALLEKLNNALAAIKaDGTYQKINDQWF 258 Escherichia coli M...
REF_mgcchina:SFV_0845 176 AVVNEWLkt--nPQLGVATEKVtdqqYFGTGLGIAVRPDNkALLEKLNNALAAIKaDGTYQKINDQWF 241 Shigella flexneri ...
EDV63480              176 AVVNEWLkt--nPQLGVATEKVtdpqYFGTGLGIAVRPDNkALLEKLNNALAAIKaDGTYQKINDQWF 241 Escherichia coli B7A

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