Conserved Protein Domain Family
YmfN

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COG4626: YmfN 
Phage terminase-like protein, large subunit, contains N-terminal HTH domain [Mobilome: prophages, transposons]
Statistics
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PSSM-Id: 443665
Aligned: 170 rows
Threshold Bit Score: 389.61
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_128746228   1 M-----------TmnqNKN----YDVVMEYASSIV--EGRKAACKEIKQSCKRFLKDLKN--PAYDFNPKNAEFVIQIIe 61 
WP_012063540   1 Mllnen-------------ingtHSWLIEYINRCK--SGEIIIGYELMQELDVLLRHFNN--PEITVDFTDAHKRIKFIe 63 
WP_012242556   1 -----------------------MNYLIKYYDEIQ--KGNIIVGKELLTVLETLIQDMDN--HRYTFDEKPGNIRIEFIe 53 
WP_013656874   1 MsnkfigykpsrYdlsNSKidgkHSYLLEYYNKALaiDDEVIIGEELKKCLSNLIDDLDN--QNYYYDCSDAELRIEFIe 78 
WP_014357431   1 Ms--------------------rAEFIEEYYDAIM--SGDIVACYRIKQVYEKLMYDLKHq-GLFVFDEDLANRPIEFIe 57 
WP_014426212   1 Myfek--------------ggiaTNYIEQYNDEIQ--SGRIPACKKLIAVYQHVVNNMHNpdLPYEYNDKLARRAVDFIe 64 
WP_102013423   1 Mmmdlq-------------ttneHSYIKEYAQAVT--DGDIVIGRRVRQTLDMLLALFDN--DSVKVDLADSTKHIRFIe 63 
WP_069177553   1 Mgkg-----------------sgQNWIAEYCAAIE--AGTVTVGDWVRRLYAVLSEGIAS--RRYFYDARKAERAIRFIe 59 
WP_003023360   1 Mp---------------PY----RNYIYEYHAKIT--SGEIIAGKWIKKIYEIIINGLQK--QEYFFNAKAANKAIRFIe 57 
WP_106721381   1 -----------------------MNYLVEYYNEIE--NGNIIVGEELKTQLDQLIQDLDN--PLYYFDEKPGQLRIDFIe 53 
WP_128746228  62 TTF---VHQKGesmegiplrGTPFLLQPWQKFIVYNLLGFYHKGT--M--LRRFKEAFVMIPRKQGKTPFMSALAWGLGL 134
WP_012063540  64 TKC---KHFEApf------aGKPFILMLFQKAFIEAIYIFKIYDEevGrlIRLYQDVLYLVSRKNGKTPLISAMCLAEFF 134
WP_012242556  54 TFC---KHTKSpf------nGEPFILELWEKAILQAAYGFKIADT--N--LRRFNEVILLIARKNGKTTFIAGIDLAEFF 120
WP_013656874  79 TFI---KHTKSpf------nGKPFILELWEKAVIEAFYSFKRSKN--G--LRRFKKLILLVARKNGKSTFCAALCFTEFM 145
WP_014357431  58 TFC---KQSQGv-------lGEPLKLMLFQKAKYQAIYGFVDKNT--R--FRKYREVLDIRGRKNGKTTELAATSIEMTV 123
WP_014426212  65 QFCyipKHSP----------RTLMKLELWQRAFISCIFGFVRKDN--G--ARQYQEAVLYVGRKNAKSCLAAAIAVYVLL 130
WP_102013423  64 NEC---KLYEApf------aGKPFKLELFQKAIVESIFAFKVWNDevGryVRKFQDVLVVMGRKNGKSPLVAAILLSEWF 134
WP_069177553  60 EFC---HHCEGr--------DDLIRLELWQKAMVAVIFGIVDAD---G--FRIWREVFIVIGRKNGKTLLAAAMIAYLAY 123
WP_003023360  58 NFC---HHSKGr--------NDLIKLELWQKAIVSVIFGIQDAEK-----IRIFREIFIVIGRKNGKSLFASAIIAYMAY 121
WP_106721381  54 TFC---KHTKSpf------nGMPFILELWEKAILQTAYGFKMADS--G--LRRFNEVILLIARKNGKTTFVAGIDLAEFF 120
WP_128746228 135 LERKSGAEIVVVGAVLKQALQGFNFIKYNLKhmGE-EKNFRVLDNNQehSI-------------SGEFqDGYmRIETIAG 200
WP_012063540 135 CGP-MGLRILCSSNDYEQADLMFQAINSMREesPGlEKVTRK--NIK--GVffgnpkkpkkngkFSYK-NKG-TIRKISA 207
WP_012242556 121 LSK-GGVDIVCASNTSEQANILFDEINNMREgsKAlSNEKRSKKNIF--HI-------------YSPK-SKN-KIKKLSA 182
WP_013656874 146 I-GNAGSDIICSSNDDAQANLIFEEIASMKEmfDPkDKRTHK--NLK--GI-------------FNLR-NKS-TIKKLSD 205
WP_014357431 124 ADGESGAENYFIATKQEQSSKGFNEAWNMIKqdQSlSRHIRK--RKS--DL-------------FFDA-NFS-FIKALAS 184
WP_014426212 131 SDNEPTAEAYCAATTRQQAQILWKYACELVKssPDlRGYFKK--KVN--SL-------------EIPS-LDA-SFVPLSK 191
WP_102013423 135 CGE-MGTKILIGSNNYEQADIMFSACDAMREesRSlAKCTRR--NNI--GIffgnqkqkkkhgkFTRQ-NKG-SIKRISA 207
WP_069177553 124 IDGEYGAKIYCLAPKLDQAMIVYDNFYQMILkePElSDVTKK--RRS--DI-------------YISE-TNT-AIKPLAF 184
WP_003023360 122 LEPEYGQEIYCLAPKLDQAALVYDGFYQMVQaeDElAELAKK--RRS--DI-------------YIAE-SNT-VIKPIAF 182
WP_106721381 121 LSR-GGVDIVCASNTTEQANILFEEINNMREqsPAlSKETRSKKNIY--HI-------------YSPK-TKN-KIKKLSA 182
WP_128746228 201 NSDRMDSLNTLIQILDELHLYKSA---SQYNTIKESGKAYRNSLCIGITTAGDNM-NTFCYKRMEYGQKILN----ETVT 272
WP_012063540 208 KTGAKEGRNIGVGAVDEVHEMKDD---TSVMPIRQALSTQDEPLFFELTTEGVVN-DGYLDNRLKEARQVLD----GELE 279
WP_012242556 183 QSRNKDGYNIEVGCIDEVHEMTDS---KVYDAIKQSQSTKEEPLIFIITTEGNTV-GGFLDSKLDYVRKMIK----GEIN 254
WP_013656874 206 KTRNKEGRNIEFAILDESHEMKDN---VIAKSIEQSQSIKDEPIFINITTEGFVD-DGYLDKELKYAREVLR----GDRE 277
WP_014357431 185 NVNGLDGLNSHCVIIDELAAIKNR---DLYDLMIQSTSSRDQPLLTCISTNGFVR-ECIFDSQYEYACKVLD----GKVV 256
WP_014426212 192 DSGSLDGLSPSLILIDELHAIKDV---NMYEVLRGGTYSRRQPLTIICSTGGYIEpNSIFDQKYAEYQQIIDgyksGEYV 268
WP_102013423 208 SGGNKEGRNIKIGAVDEVHEMADN---HLVMPIRQALSTQDEPLYFEITTEGFTE-GGYLDQRLEQATHVLD----GEVE 279
WP_069177553 185 SAKKSDGFNPHAVINDELGSWVGDaglKQYDVMKSAQGARRQPLIISITTAGYVH-DGIYDELLTRSTAFLK----GHSA 259
WP_003023360 183 NAKKSDGFNPQLVVCDEMAAWSGDaglKQYEVMKSALGARTQPMILSISTAGYIN-DSIYDELMKRSTSFLK----GNSK 257
WP_106721381 183 QSRNKDGYNIEVGCIDEVHEMTDS---KVYDAIKQSQSTKKEPLIFIITTEGTTI-GGFLDSKLDYARKMLK----GEIQ 254
WP_128746228 273 DEQMFVFISKADENPetgdvD-YLNPIEHEKANPNYNVSVSGRELMNDALQAQNDPQQRKSFLAKSLNIYTSAIKAYFII 351
WP_012063540 280 RPRWLIWLHTQDNEQ-----EiWQNEKSWHKSNPGLGVIKKWSFMRKMIEEAKNSKSKRVFVLSKDFNIKQNNAAAWLTP 354
WP_012242556 255 DERVLPWLYTQDSIN-----EiYEDKSTWQKSNPSLGTVKTYSYLEDLMNKSRHDLATRVTMLCKDFNIKQLEQGSWLTY 329
WP_013656874 278 DDTLLAWLYTMDNEI-----EvYQDELSWKKANPSLGTVKKWDYLRDQLRKAQADKAERVFTLSKDFNFKQNNAEAWLME 352
WP_014357431 257 DDTFLPFIYELDDRD-----E-WDKEECWIKANPGLGVIKKIEVLRGFVNKAKEDPAFKATVMVKDFCATENAATAWLRW 330
WP_014426212 269 DETTLPILYELDDKS-----E-MNDEKAWLKANPNLGVSKSIEILRQEVNRASLSDRAWADLACKQFNVRQSSREAFFQP 342
WP_102013423 280 MPDFLIWWYAQDSEE-----EvWQDEGSWQKSNPGIGVIKKYSFLRKMVDEARTSATTRAFVLSKDFNIKQNSATAWLDM 354
WP_069177553 260 ESRLCPFLYLIDDPG-----K-WRDLRELRKSNPNMGVSVSADYYREEIAIAEKNISKRREFLTKYCNIKQNSSMAWLDF 333
WP_003023360 258 ERRLLPFLYMIDDVE-----K-WNDIDELKKANPNMGVSVKESFFMDEIAVAEGSLSKKAEFLTKYCNIKQNSSIAWLEY 331
WP_106721381 255 DNRVLSWLYTQDSTK-----EiYEDPTTWQKSNPSIGVVKLNNYLEDVMNKSKHDLSTRLTMLCKDFNIKQADSGSWLSF 329
WP_128746228 352 DEFRRSNk---nAEiklginpawtITEkiafLKnlNIQWYGGADLSKLHDLTAAALYGSYKtgrtititteNgeeikipe 428
WP_012063540 355 EDIENLEt----FD----------IEE----FR--NCFAIGGVDLSKTGDFCSARALLMKPg---------S-------- 397
WP_012242556 330 NDLNNESt----YD----------INE----LR--NSYAIGGVDLSSTTDLTVALLLLIK-----------N-------- 370
WP_013656874 353 KDIENSLt----YD----------IED----FR--GCIGIGATDLSETTDLTSAKVLIMRPk---------D-------- 395
WP_014357431 331 EELYNPEk----FE----------AKE----MG--FRYGIGSFDLAETTDLAAAKVVCKRRd---------D-------- 373
WP_014426212 343 NDVIQCKce--kLD----------YAS----LD--GCSYICGIDLGTTTDLTCATAIVKQPg---------D-------- 387
WP_102013423 355 ATIINPAt----FD----------MRE----LE--GAMYIGGLDYAETTDLCSAKAMFVK-----------D-------- 395
WP_069177553 334 SEVMAAVrgaegLT----------LAD----FR--GCYAVGGVDLSQTVDLTAASVVIRR-----------D-------- 378
WP_003023360 332 QTVENAGve---kT----------LED----FR--DCYAVGGIDLSQTTDLTAASVVIQK-----------D-------- 373
WP_106721381 330 DDLNNEDk----YS----------IDD----LR--DSYAVGGVDLSSTTDLTAAVLVIQKRd---------S-------- 372
WP_128746228 429 EIDIAITHAWFPIVMAA------QKAEEDGIPLFGWKDDGWLDMSNSPTVNHAEIVNWFVnMKRKGFKI--KQVGHDRKF 500
WP_012063540 398 DKKYFLQHYFIPEAKLN------TLNREEERKYREWVRQGLITLSDGNENDFRHVTAWFV-KLFKEYGIrfYKVGYDKWS 470
WP_012242556 371 GKKYVIPQFFMPSEVIK------RRKEEDNVPYDIWVQRGLITVTEGNQNDFTLVTQWFL-MMIRTYEIrpLWVGYDPWN 443
WP_013656874 396 KTKYFLQHYFICETKVD------EGSNEDKKNYLEWAKQGYITICPGNEVDYSEIVAWYV-SLYKKYQIwvFKVGYDRWN 468
WP_014357431 374 DKDYYLSMYWLPEENLN------NKELLDQVPYLLWEKQGLLRVCPGNRINPYAILEWFI-EVQDVYDIyiPWIGYDPWH 446
WP_014426212 388 DVLKVLQMYWIPESTIE------EHEEQDKAPYSTWISNGYMRTVEGSIIDTDVVLAWFR-EIEQKHGLymYKCGYDQYH 460
WP_102013423 396 GIKYLTGMYFIPQTKADailddkNLKNPEHKDYHKWAQQGLVTICEGTEVDEQVVANWFI-GLYENYHMmpFKFGYDNWH 474
WP_069177553 379 GTDYVFTRFFMPAERLE------KAIATDRVPYDVYVQRGFITLSGEHCVDYRYVYRFFV-DLLREHEIytLKIGYDRYS 451
WP_003023360 374 GTLYAFTQFFMPRGRLE------YLQATDGVPYDIFVRKGLITLSGENYVDYHDVYSWFT-MLLENYGIrpLKIGYDRYS 446
WP_106721381 373 NKKYIIPHFFMPSEVVE------KRIKEDNVPYDIWIKKGFVTLTDGHQNDFSLVTQWFM-KMIQTYGIrpLWVGYDPWN 445
WP_128746228 501 C-REYFIGMKQA-GFS-IVDQPQYFYRKSEGFRHIEAKVKAECFY-YLGSDAFEYCTENVGAIEKTDDm-IQYEKIMP-- 573
WP_012063540 471 A-VYWRKEMEEY-GFD-TQKVDQNWGSMSEPMKLLEVDLKSNKVV-YNNHPIDRLCLENTAMNVNTKEe-IMPIKIQGkd 545
WP_012242556 444 S-QYWTKEMEDL-GFE-MEKVRQGIYSLSEPMKQLEADLKNGNVI-YNNNPIMKWNLSNTQAKIDINGn-IQPSKLGS-- 516
WP_013656874 469 A-KSYVKEMEDY-GFDn-EKIPQDYKNMSTAMKMLEADLKSGCVN-YNQNPIDKWCLKNTACKVDQYGq-IMPMKVQGie 543
WP_014357431 447 VdASLLMAFQNHfGKNaMISVRQGSYTLSMPMKELKAELIAKQSV-YNDHPIDKWCLKNLEVKVDINGn-IQPVKGVSq- 523
WP_014426212 461 A-TYLAKTLRESyGNDmIEAVGQTFKALSAPMYASRAMFKDKKIL-F-DNPVFTWNLLNTQVQYDQSGn-VKPFKNRNl- 535
WP_102013423 475 S-KGFKRCMGEYfGDEvLEKVGMDFMSLSSPMHSMESDMKLKKLN-YNNNPIDKWCFENMSIKTNNIGl-VMPVKKYGqs 551
WP_069177553 452 S-AYLVNDLKEF-GFH-TDDVYQG-YNLSGVLDEFEGELKNGKVKiIGDNQLLAAHFLNVALKEDSETrkKKPVKIEQ-- 525
WP_003023360 447 A-QYLITDMANY-GFH-MDDVYQG-ENLTPVIREFEGIIKDGDFK-IADNNLLKTHFLNVALKHNMETrkFRSIKIEQ-- 519
WP_106721381 446 S-QYWIKEMEDL-GFN-MEKVRQGIYSLSEPMKILEADLKNNLVN-YNNNPILKWCLANTQAKVDLNGn-IQPSKLNS-- 518
WP_128746228 574 E-RRIDIFDATVFGSVRKLEsmeksseasTFLKS 606
WP_012063540 546 D-KKIDGAVTKMICYRVYIDnki---eflELVKR 575
WP_012242556 517 KyKRIDGAVALIIAYAVLNRykl---eyeNML-- 545
WP_013656874 544 N-KRIDGAVTMIIAYATYDRfrk---eyqDVMR- 572
WP_014357431 524 T-QKIDGAVAMIIVKVILRDkma---eylNMI-- 551
WP_014426212 536 H-VRIDGYSSFLSAFAVYQSvkddla-------- 560
WP_102013423 552 K-NRIDGGMATIICYATYSRyki---eyeQAMNM 581
WP_069177553 526 R-ARIDGFMSVIDAWTVRQKyyp---eigALIEN 555
WP_003023360 520 R-AHIDGFVSVIDAMTVRQKywe---ecgELLKN 549
WP_106721381 519 KyKRIDGTVALIIAYVVLNRykt---dyeNMI-- 547
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