2Y9M,5NKZ


Conserved Protein Domain Family
UBCc_ScPEX4-like

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cd23812: UBCc_ScPEX4-like 
Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of Saccharomyces cerevisiae Peroxin-4 (PEX4) protein and related proteins
Saccharomyces cerevisiae PEX4 (EC 2.3.2.23), also called ubiquitin-conjugating enzyme E2-21 kDa, UBC10, or PAS2, acts as a ubiquitin-conjugating enzyme that catalyzes the covalent attachment of ubiquitin to other proteins. It is essential for peroxisome biogenesis and is required for UBC4-independent ubiquitination of PEX5. This subfamily also includes Arabidopsis thaliana PEX4 (also known as UBC21, EC 2.3.2.23) that is required for peroxisome biogenesis. It is necessary for the developmental elimination of obsolete peroxisome matrix proteins. It may be involved in the ubiquitination of PEX5, targeting it for recycling.
Statistics
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PSSM-Id: 467432
Aligned: 55 rows
Threshold Bit Score: 182.748
Created: 11-Aug-2017
Updated: 27-Apr-2023
Structure
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Program:
Drawing:
Aligned Rows:
 
active site
Conserved site include 1 residue -Click on image for an interactive view with Cn3D
Feature 1: active site cysteine [active site], 1 residue position
Conserved feature residue pattern:CClick to see conserved feature residue pattern help
Evidence:
  • Comment:forms a thioester with ubiquitin or ubiquitin-like proteins
  • Comment:serves as the point of attachment of ubiquitin prior to transfer to cellular target
  • Citation:PMID 9497353
  • Citation:PMID 9705497

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                         
2Y9M_A          9 SRIVKEYKVILktlasdd---pianpyrGIIESLNPIDet--dlSKWEAIISGPsdt---pyeNHQFRILIEVPssYPMN 80   baker's yeast
Q9P6I1          6 KRLHKEYASFQag-------------diSGLLLLKPVTdv--dmFHWKAVIEGPtet---pyeGGQWVLDIHVHegYPIS 67   Schizosacchar...
EGF81036        8 NRLLKELNAHQrkirl-------gcshdSQLVILQPQSdq--dlFHWNATIYGRsnt---pyaGGQFELEILVPkdYPTD 75   Batrachochytr...
CDI51319        8 KRLLKEYATTQrelgltsthphrspsanPDLIELRPWDvegedlSEWTAIIRGPssg---fytGGIFQLSIAVPsnYPTK 84   Melanopsichiu...
CEG64398        6 KRLLKELREIDkea-----------ashPQIIELSPISdd--dlLHWKAIIAGLpdt---pyeGGQFELSIKIPsnYPIH 69   Rhizopus micr...
XP_027483571   11 RRLAHERRGAEha-------------qdEHIHGLRPVSda--nlFAWSAVIHAPadg---aydGGRFEIDIQVPdtYPIK 72   Malassezia re...
CCG84296        4 RRLLKEYSTLQka-------------pnPHMLALEPVNed--dlFHWRATFSGQsds---pyaDGVFIVDIVAPreYPIE 65   Taphrina defo...
XP_002175931    6 NRLLREYRQLRre-------------riPGVVDLHPISer--nmYEWIALLEGPset---pyeGGTWILLLSIPksYPIE 67   Schizosacchar...
XP_002420796    4 KRLFKEYNQYQkqlp---------qlnnDQIVSLSPVSpdk-niLLWEATIAKPgkpdspyyyGGQWKLSISVPtsYPID 73   Candida dubli...
XP_028890691    4 KRLLKELKQLNkhhp---------sltnAQIMSIEPLTdd--slYEWSAIIAKPtkadspyyyNGQWTLDITVSdqYPNK 72   [Candida] auris
Feature 1                                 #                                                       
2Y9M_A         81 PPKISFMq-nNILHCNVKSATGEICLNILkpeeWTPVWdLLHCVHAVWRLLREPVcDSPLDVDIGNIIRCGdMSAYQGIV 159  baker's yeast
Q9P6I1         68 PPSVYFQt--KIVHPNISWTNGEVCMDILkt-hWSPAWsLQSACLAIISLLSNYDaSSPLNVDAAKLLRTGdKTAYNSLV 144  Schizosacchar...
EGF81036       76 PPRIRFIt--TICHPNIHIKTGEICLDLLnk-aWSPAWtLESTCMAILDLLSNPEaDSPLNCDAANLIRSGdHRGYNSLV 152  Batrachochytr...
CDI51319       85 PPSIKFKt--KIFHPNVSWKDGEICLDILqs-qWTPAWsLSSACTAILALLDAPEpDSPLNVDAATLYRTGdVRAYGSMC 161  Melanopsichiu...
CEG64398       70 PPNIRFVt--TICHPNIHFKTGEICLDILkt-dWSPAWtLRSTVLAITLLLTNPEpSSPLNCDAANLLRCNdKLGYESLI 146  Rhizopus micr...
XP_027483571   73 PPTMRFRt--RIFHPNVHWKSGEICLDVLkt-qWSPAWtLHSACTAVVALLDAPEpDSPLNVDAANLLRTGdLIAYRSMC 149  Malassezia re...
CCG84296       66 PPSMRFLt--KICHPNVNFTTGEICLDILks-qWSPAWtIQSACTAVRELLVSPEpDSPLNIDVANLLRAGdLLGYESLV 142  Taphrina defo...
XP_002175931   68 PPSIRFCn--KIIHPNICWKTGKVCIDILqt-gWTPAWnLQSACLAVLSLLDNAEtTSPLNADAAKLLRTGdRIAYNSLV 144  Schizosacchar...
XP_002420796   74 PPVIKFIt--PIVHPNINLTTGEICLDILkkesWSPAWnLEHLVVAILMLLDQPEpDSPLNIDAANLYRQD-KVAYESIV 150  Candida dubli...
XP_028890691   73 PPKVYFSrktPICHPNINIETGEICLDILkdesWSPAWnLEHVVVAILMLIDDPEpDSPLNIDSANLFRSD-KAAFESVV 151  [Candida] auris
Feature 1               
2Y9M_A        160 KYFLAE 165  baker's yeast
Q9P6I1        145 RCTTYL 150  Schizosaccharomyces pombe 972h-
EGF81036      153 QMYTAL 158  Batrachochytrium dendrobatidis JAM81
CDI51319      162 RMYTML 167  Melanopsichium pennsylvanicum 4
CEG64398      147 RMYTQL 152  Rhizopus microsporus
XP_027483571  150 AMFTRF 155  Malassezia restricta
CCG84296      143 RMYVDM 148  Taphrina deformans PYCC 5710
XP_002175931  145 QCMTHL 150  Schizosaccharomyces japonicus yFS275
XP_002420796  151 QFNMWK 156  Candida dubliniensis CD36
XP_028890691  152 QYYLWK 157  [Candida] auris

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