3A0B


Conserved Protein Domain Family
Photosystem-II_D1

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cd09289: Photosystem-II_D1 
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D1 subunit of photosystem II (PS II)
Photosystem II (PS II), D2 subunit. PS II is a multi-subunit protein found in the photosynthetic membranes of plants, algae, and cyanobacteria. It utilizes light-induced electron transfer and water-splitting reactions to produce protons, electrons, and molecular oxygen. The protons generated are instrumental in ATP formation. Molecular dioxygen is released as a by-product. PS II can be described as containing two parts: the photochemical part and the catalytic part. The photochemical portion promotes the fast, efficient light-induced charge separation and stabilization that occur when light is absorbed by chlorophyll. The catalytic portion, where water is oxidized, involves a cluster of Mn ions close to a redox-active tyrosine residue. The Mn cluster and its ligands form a functional unit called the oxygen-evolving complex (OEC) or the water-oxidizing complex (WOC). The D1 and D2 subunits are a pair of interwined polypeptides. They contain all the cofactors involved directly in water oxidation and plastoquinone reduction. The D1 subunit contains the Mn cluster that constitutes the site of water oxidation. D1 and D2 are highly homologous and are also similar to the L and M proteins in bacterial photosynthetic reaction centers.
Statistics
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PSSM-Id: 187747
Aligned: 12 rows
Threshold Bit Score: 656.954
Created: 27-Sep-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 47 residues -Click on image for an interactive view with Cn3D
Feature 1:chlorophyll binding site
Evidence:
  • Structure:3A0B_A; Thermosynechococcus vulcanus PSII binds chlorophyll A, defined using 4.0 A contacts.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                               #  #  ##    #                                         
3A0B_A      7 RRESANLWERFCNWVTSTDNRLYVGWFGVIMIPTLLAATICFVIAFIAAPPVDIDGIREPVSGSLLYGNNIiTGAVVPSS 86  Thermosynechococcu...
Q95B52      7 RRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFMMAFIAAPPVDIDGIREPVSGSLLYGNNIgAGAIIPTS 86  Prunus ansu
A5GTY4      7 QRSGASAWQQFCEWVTSTDNRLYVGWFGVLMIPTLLAATTCFIVAFIAAPPVDIDGIREPVAGSLLYGNNIiSGAVVPSS 86  Synechococcus sp. ...
NP_904209   7 RRESASLWGRFCDWVTSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIiSAAIIPTS 86  Physcomitrella pat...
P50155      7 RRESANLWGRFCDWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIiSGAIIPTS 86  Norway spruce
P35860      7 RRESASLWARFCEWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGYLLYGNNIiSGAVVPTS 86  'Chlorella' ellips...
P09752      7 RRESTSLWARFCEWITSTENRIYIGWFGVIMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIiSGAVIPTS 86  Chlamydomonas moew...
ABA02341    8 NKSANSMWARFCAWVTSTENRLYIGWFGVLMIPTLLTAISVFIIAFVAAPPVDIDGIREPVSGSLLYGNNIiTGAVVPTS 87  Tetraselmis suecica
P24725      7 RRQTASLWERFCSWITSTENRLYIGWFGVLMIPTLLTATSVFIIGFIAAPPVDIDGIREPGFRSLLYGNNIiTGAIVPTS 86  Galdieria sulphuraria
NP_050699   7 RRESASLWERFCSWITSTENRLYIGWFGVLMIPTLLTATTVFIIAFIAAPPVDIDGIREPVAGSLLYGNNIiTGAVIPSS 86  Guillardia theta
NP_043625   7 RREGVSLWERFCAWITSTENRLYIGWFGCLMFPTLLTATSCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIiSGAVIPSS 86  Odontella sinensis
NP_041895   8 KYARPSLWYRFCAWVASKKNRLYVGWFGVLMIPTLLTAATVFIIAFIAAPPVDIDGIREPVSGSLFYGNNIiTGAVVPTS 87  Euglena gracilis
Feature 1           #####                #   ## #     ##  #               # ### ##  ##        
3A0B_A     87 NAIGLHFYPIWEAASLDEWLYNGGPYQLIIFHFLLGASCYMGRQWELSYRLGMRPWICVAYSAPLASAFAVFLIYPIGQG 166 Thermosynechococcu...
Q95B52     87 AAIGSHFYPIWEAASVDEWLYNGGPYGLTVLLFLLGVACYMVREWELSCRLGMRPWIAVAYSAPVTPTTTILLIYPIDQE 166 Prunus ansu
A5GTY4     87 NAIGLHFYPIWEAASLDEWLYNGGPFQLVIFHFLIGIYAYMGREWELSYRLGMRPWICIAYSAPVAAASAVFLVYPFGQG 166 Synechococcus sp. ...
NP_904209  87 AAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSYRLGMRPWIAVAYSAPVAAATAVFLIYPIGQG 166 Physcomitrella pat...
P50155     87 AAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQG 166 Norway spruce
P35860     87 NAIGLHFYPIWEAASLDEWLYNGGPYQLIVCHFFLGICCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFIIYPIGQG 166 'Chlorella' ellips...
P09752     87 NAIGLHFYPIWEAASLDEWLYNGGPYQLIVCHFFIGICCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFIIYPIGQG 166 Chlamydomonas moew...
ABA02341   88 NAIGLHFYPIWEAASLDEWLYNGGPYQLIVCHFFIGVCAYMGREWELSFRLGMRPWIAVAYSAPVMAATAVFIIYPIGQG 167 Tetraselmis suecica
P24725     87 NAIGIHFYPIWEAASLDEWLYNGGPYELIVLHFFIGICAYMGREWELSYRLGMRPWIAVAFSAPVAAATAVFIIYPIGQG 166 Galdieria sulphuraria
NP_050699  87 ASIGIHFYPIWEAASLDEWLYNGGPYQLIVDHFLLGVCGWIGREWEFSYRLGMRPWISVAFTAPVAAASAVFLVYPIGQG 166 Guillardia theta
NP_043625  87 NAIGMHFYPIWEAASIDEWLYNGGPYQLIVLHFLLGVASYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQG 166 Odontella sinensis
NP_041895  88 NAIGLHFYPIWEATSLDEWLYNGGPYQLIVCHFFIGICSYMGREWELSFRLGMRPWIAVAYSAPVAAASAVFIVYPLGQG 167 Euglena gracilis
Feature 1          #   #  #   ## ##     #    ## ### ###  #                                    
3A0B_A    167 SFSDGMPLGISGTFNFMIVFQAEHNILMHPFHQLGVAGVFGGALFCAMHGSLVTSSLIRETTETESANYGYKFGQEEETY 246 Thermosynechococcu...
Q95B52    167 SFSNGIPLEISGTFNFMIVFQAKHNILIHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRVSTENESANEGSRFGQEEETY 246 Prunus ansu
A5GTY4    167 SFSDAMPLGISGTFNYMLVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLVRETTESESQNYGYKFGQEEETY 246 Synechococcus sp. ...
NP_904209 167 SFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYKFGQEEETY 246 Physcomitrella pat...
P50155    167 SFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENQSANAGYKFGQEEETY 246 Norway spruce
P35860    167 SFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESRNAGYKFGQEEETY 246 'Chlorella' ellips...
P09752    167 SFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYRFGQEEETY 246 Chlamydomonas moew...
ABA02341  168 SFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYKFGQEEETY 247 Tetraselmis suecica
P24725    167 SFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMMGVAGVFGGSLFSAMHGSLVTSSLIRERTENESANNGYKFGQEYETY 246 Galdieria sulphuraria
NP_050699 167 SFSDGMPLGISGTFNFMLVFQAEHNILMHPFHQLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANYGYKFGQEEETY 246 Guillardia theta
NP_043625 167 SFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETTENESTNYGYKFGQEEETY 246 Odontella sinensis
NP_041895 168 SFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLLRETTENESINVGYKFGQEEETY 247 Euglena gracilis
Feature 1                                       #   ###  #                                    
3A0B_A    247 NIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWRVVGVWFAALGISTMAFNLNGFNFNHSVIDAKGNVINTWADIINRANL 326 Thermosynechococcu...
Q95B52    247 NIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDMQGRVINTWADKVNRANL 326 Prunus ansu
A5GTY4    247 NIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGVSTMAFNLNGFNFNQSILDSQGRVLNTWADILNRAGL 326 Synechococcus sp. ...
NP_904209 247 NIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL 326 Physcomitrella pat...
P50155    247 NIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVAGIWFTALGISTMALNLNGFNFNQSVVDSQGRVINTWADIINRANL 326 Norway spruce
P35860    247 NIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL 326 'Chlorella' ellips...
P09752    247 NIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGLSTMAFNLNGLNFNQSVVDSNGRVLNTWADIINRANL 326 Chlamydomonas moew...
ABA02341  248 NIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTAMGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL 327 Tetraselmis suecica
P24725    247 NIVAAHGYFGRLIFQYASFNNSRSLHFFLALWPVVCICVTALGVSTMAFNLNGFNFNQSVVDSQGRVINTWADILNRANL 326 Galdieria sulphuraria
NP_050699 247 NIVAAHGYFGRLIFQYASFNNSRALHFFLGLWPVVGIWFTALGIMTMAFNLNGFNFNQSVVDSQGRVINTWADILNRANL 326 Guillardia theta
NP_043625 247 NIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTAMGVSTMAFNLNGFNFNQSVVDSQGRVINTWADIINRADL 326 Odontella sinensis
NP_041895 248 NIIAAHAYFGRLIFQYASFNNSRSLHFFLAVWPVVGIWFTALGVSTMAFNLNGFNFNQSVIDSQGRVINTWADIINRANL 327 Euglena gracilis
Feature 1                       
3A0B_A    327 GMEVMHERNAHNFPLDLA 344 Thermosynechococcus vulcanus
Q95B52    327 GMEVMHERNAHNFPLDLA 344 Prunus ansu
A5GTY4    327 GMEVMHERNAHNFPLDLA 344 Synechococcus sp. RCC307
NP_904209 327 GMEVMHERNAHNFPLDLA 344 Physcomitrella patens subsp. patens
P50155    327 GMEVMHERNAHNFPLDLA 344 Norway spruce
P35860    327 GMEVMHERNAHNFPLDLA 344 'Chlorella' ellipsoidea
P09752    327 GMEVMHERNAHNFPLDLA 344 Chlamydomonas moewusii
ABA02341  328 GMEVMHERNAHNFPLDLA 345 Tetraselmis suecica
P24725    327 GIEVMHERNAHNFPLDLA 344 Galdieria sulphuraria
NP_050699 327 GIEVMHERNAHNFPLDLA 344 Guillardia theta
NP_043625 327 GMEVMHERNAHNFPLDLA 344 Odontella sinensis
NP_041895 328 GMEVMHERNAHNFPLDLA 345 Euglena gracilis

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