2C4N,1WVI,1ZJJ,1YV9,4I9F,1YDF


Conserved Protein Domain Family
HAD_Pase_UmpH-like

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cd07530: HAD_Pase_UmpH-like 
Click on image for an interactive view with Cn3D
UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase
Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Statistics
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PSSM-Id: 319832
Aligned: 23 rows
Threshold Bit Score: 305.671
Created: 11-Jun-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             #####                           ####                                       
2C4N_A         4 KNVICDIDGVLMHDnvaVPGAAEFLHGImdkGLPLVLLTNYPSqTGQDLANRFATAGVdvpdSVFYTSAmATADFLRrqe 83  Escherichia coli
4I9F_A        17 DCLLIDLDGTVFCGrqpTGGAVQSLSQV---RSRKLFVTNNASrSADEVAAHLCELGFtatgEDVVTSAqSAAHLLAgql 93  Mycobacterium t...
NP_768534     14 EGIISDLDGVVYRGgtaIADAIEAFTRWqkaGVPFCFATNNSThTPEDVVGRLRGSGLsiapSQVVTSAiTAAELVRtny 93  Bradyrhizobium ...
ABC72335      13 ETWLIDMDGVLIRDddaLSGAESFIHQLkkqERQFLVLTNNAIyTRRDLAARLSDVGLtipeERIWTSAvATAQFVSnqm 92  uncultured halo...
YP_445614      9 HAWLLDMDGVLVHEevvLPGAQEFIERLrekELPFLVLTNNSIyTRRDLSARLARAGLdvpeAKIWTSAvATAQFLSnqa 88  Salinibacter ru...
NP_696219     17 QLALLDLDGVVYRGknpVEYAADSIRAAeaaGMTIEYTTNNSSrFQHVVADQLKGFGLdvepWQVITSSvVAARMVAkal 96  Bifidobacterium...
EDX74598      40 QAFICDMDGVIYHGnrlLPGVEAFLDWLkasEKKFLFLTNSSErSPRELREKLKRLGVevpeEHFYTSAlATAAFLAqqc 119 Microcoleus cht...
NP_627072      8 ESWLTDMDGVLIHEgvpIPGADAFIKRLrdsGKPFLVLTNNSIyTPRDLHARLRRMGLevpiESIWTSAlATAQFLEdqr 87  Streptomyces co...
YP_003768173  10 DAVLFDLDGTVYHGtrvIPGAPETVRAArehGTPVRFVTNNASkAPDEVVAHLTALGMpaetGEVHTSAqAGVQLLKerl 89  Amycolatopsis m...
NP_626059     21 DTALLDLDGVVYAGgnaIAHAVDSLAAArdgGMRLAYVTNNALrTPDAVAAHLTELGIptgaEDVVTSAqAVARLMAeql 100 Streptomyces co...
Feature 1                                                                            #           
2C4N_A        84 --gkKAYVVGEGALIHELYkagft---itdvnPDFVIVGETrs-yNWDMMHKAAYFVanGARFIATNPDTHGr---GFYP 154 Escherichia coli
4I9F_A        94 apgaRVLIVGTEALANEVAavglrpvrrfedrPDAVVQGLSmt-tGWSDLAEAALAIraGALWVAANVDPTLpterGLLP 172 Mycobacterium t...
NP_768534     94 phltRIYVIGASSLVTAMRdvgle---vtdraPEAVVMGLDrd-iTHEKLRIAVESIlnGAVFIGTNPDLLLptasGFEP 169 Bradyrhizobium ...
ABC72335      93 -pdaSAYVIGEAGLKTALHdvgyt---ltgtnPDFVVLGESrt-ySFQNITAAVRLVnqGARFIVTNPDATApsaeGPLP 167 uncultured halo...
YP_445614     89 -peaSAYAVGEAGLTTALHevgyt---ltdadPDFVVLGETrt-ySFQHITAAVRLIeqGARFIATNPDVTGpspdGPLP 163 Salinibacter ru...
NP_696219     97 pagaRVQVLGAEHLRDEVTrngltivdgpqdrPQAVIQGWYpd-mTWQMMADAAFAVeaGATYFVTNRDLTIprelGIAP 175 Bifidobacterium...
EDX74598     120 -pggSAFVIGEAGLTNALYdagfs---mndtnPDYVVVGETrs-ySFEKLEQAAQLVikGAKLIGTNPDLTGpsekGIVP 194 Microcoleus cht...
NP_627072     88 -pggSAYVIGEAGLTTALHdigyi---ltdhdPDYVVLGETrt-ySFEAMTKAVRLInaGARFICTNPDETGpsteGPLP 162 Streptomyces co...
YP_003768173  90 epgaEVLVVGTESLAAEVAgagltpvrengdgVRAVVQGHSpd-nTWAALAEACLAIraGALWVACNVDATLpserGLLP 168 Amycolatopsis m...
NP_626059    101 psgaRVLVIGGEGLRVALRerglepvesaeddPAAVVQGFGgpelPWGRFAEACYAIerGVPWYASNTDLTIpgarGIAP 180 Streptomyces co...
Feature 1                              #                             ###  ##                     
2C4N_A       155 ACGALCAGIEKIsgrk-pfyVGKPSPWIIRAALnkmq------ahsEETVIVGDNLRTDILAGFQaGLETILVLSGVSSL 227 Escherichia coli
4I9F_A       173 GNGSMVAALRTAtgmd-prvAGKPAPALMTEAVarg--------dfRAALVVGDRLDTDIEGANAaGLPSLMVLTGVNSA 243 Mycobacterium t...
NP_768534    170 GAGATIAAVAAAtqvr-psiVGKPQVPMIETALsrlg------tkrGSTIMIGDQVPTDIQAGKRaGLATVLVTTGVPTR 242 Bradyrhizobium ...
ABC72335     168 ATGSVAALITEAtgke-pyfVGKPNPIMIRSALnklg------ahsKSTAMVGDRMDTDVVAGIEaGLTTYLVLTGSTDR 240 uncultured halo...
YP_445614    164 ATGSVAALIREAtgqk-pyfVGKPNPIMIRSALnqie------ahsATTAMAGDRMDTDVMAGMEaGLTTHLVLSGSTRR 236 Salinibacter ru...
NP_696219    176 GCGSMIRAVITAtgvepvasAGKPEAYMYDEARelnaaeghdlvpkEASIAIGDRLDTDIEAGNRgDYDSLAVLTGVTNP 255 Bifidobacterium...
EDX74598     195 ATGALIAPLELTtgak-ayfVGKPNPLMMRHALkklg------crrEDTAIIGDRMDTDIIAGIEsEIETALVLSGVTRQ 267 Microcoleus cht...
NP_627072    163 ATGAVAALITKAtgkq-pyfAGKPNPLMMRTGLnaig------ahsETSAMIGDRMDTDVLAGMEaGMQTFLVLTGLTRP 235 Streptomyces co...
YP_003768173 169 GNGSMVAALRTAteve-plvAGKPQPLLFETAArsa--------gaERPLVVGDRLDTDIAGAVAaGIDSLVVLSGVATP 239 Amycolatopsis m...
NP_626059    181 GNGAAVEVVRIAtgae-pqvAGKPLPPMHRETIlrt--------gaRRPLVVGDRLDTDIEGAFNgEVDSLLVLTGVTDG 251 Streptomyces co...
Feature 1                             
2C4N_A       228 Ddid--smPFRPSWIYPSVAE 246 Escherichia coli
4I9F_A       244 WdavyaepVRRPTYIGHDLRS 264 Mycobacterium tuberculosis
NP_768534    243 Qdp----sLMAPDFIVSSLRE 259 Bradyrhizobium japonicum USDA 110
ABC72335     241 Edvs--eyAYRPHRIVESIAE 259 uncultured haloarchaeon
YP_445614    237 Eeis--dfAYRPNNVVESISE 255 Salinibacter ruber DSM 13855
NP_696219    256 TelmlapsHLRPTFIAPDLRE 276 Bifidobacterium longum NCC2705
EDX74598     268 Edli--hfAYRPHYILPGVGD 286 Microcoleus chthonoplastes PCC 7420
NP_627072    236 Eqve--nfPYRPSQVVDSIAD 254 Streptomyces coelicolor A3(2)
YP_003768173 240 KqlieavpAERATYLAKDLTA 260 Amycolatopsis mediterranei U32
NP_626059    252 AqllaaapQHRPTYVDADLRG 272 Streptomyces coelicolor A3(2)

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