5OOM,1DMG


Conserved Protein Domain Family
Ribosomal_L4

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pfam00573: Ribosomal_L4 
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Ribosomal protein L4/L1 family
This family includes Ribosomal L4/L1 from eukaryotes and archaebacteria and L4 from eubacteria. L4 from yeast has been shown to bind rRNA.
Statistics
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PSSM-Id: 425758
Aligned: 115 rows
Threshold Bit Score: 94.0911
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5OOM_F        80 ADLhPDVFATAPRLDILHQVAMWQKNFKRISYAKTK-TRAEVRGGGRKPWPQKGTGRARHGSIR------------SPLW 146 human
A0DT47        50 ITLdQEIFNQPIRRDLVQRLVRYTDLYDKKVTKATL-ALRDAAASGAKNHPQKKTGRARQGHRQ------------RPGR 116 Paramecium tetr...
EDL45215     142 VSVpNDIFGLPIRPDILHKCYYFYRTALAGYTERMQlYKWEWPGSTKKYRSQKKSGKARMNWRK------------TCGR 209
Q4UI83       110 LRVpNDIFGLPIRPDILHRCYQFYRRAKAGYSEDMQlYKWEWPGSTKKWRKQQKSGKARIGWKK------------SPGK 177 Theileria annulata
Q8SRC2        19 LDL-PEVFSVPIRQDLVLKTYSLYRMKTRQPYAVSKnAGMQHSA--ESWGT--GRAIARVPRVKgggtrragqgafANFC 93  Encephalitozoon...
XP_001324688  19 IEL-PKVFDTPIRAEVVKEVYVNLAKNAQQPHANDPmAGKKVSA--ISWGT--GRAKACVPRVNgsgsnrngqgayANFC 93 
BAN66180      21 TLM-PKVFSAPLRLDLVRIVHTNMSKNRRQAYAVSKmSGYQTSA--RSWGT--GRAMARVPRVKgggthragqaayANFC 95 
XP_676211     22 VEI-PVVFQTPIRNDLIEYIFTNISKNTRHPYAVKLgAGYETSA--ESWGT--GRAVARIPRVPgggthragqaafGNMC 96 
Q3SEA6        23 IPL-PAVFQTPIRPDIVSFVHTNIAKNRRQAHAVNPqAGMQHSA--ESWGT--GRAVARIPRVSgsgthrsgqaafGNQC 97  Paramecium tetr...
XP_001388335  23 IPL-PTVFVSPLRHDLVRYVFTNMSKNKRQAYGVSTkAGHQHSA--ESWGT--GRAVARIPRVSasgtsrsgqgafGNMC 97 
5OOM_F       147 RGGGVAHGPRGpTSYYYMLPMK----------VRALGLKVALTVKLAQDDLHIMD-------SleLP-------TGDPQY 202 human
A0DT47       117 NKGIKAHGRKI-RSLRIDLPRK----------VRLQAYKVGLTAALIEGKFTVID-------TekLN-------EGKTKH 171 Paramecium tetr...
EDL45215     210 YLGVKNHPLRP-FDQRTKINRK----------LLWRGMKIILSAKFAQDQIKVVDn-----fL--IK-------SHKTKY 264
Q4UI83       178 YVGVFAHPLRP-KDNRTKIQRRsklvflirflALYTGLKIMLSAKFAQSQIQVVDs-----fL--MA-------SHKTKY 242 Theileria annulata
Q8SRC2        94 RKGRMAHPTKThRRWARKVVEN----------TKKIAEAMAVAASAQASLVEARGhrisdvkMlpIIvsddiakARKTKD 163 Encephalitozoon...
XP_001324688  94 RGGHRFNPPTLlRRWFRPVPSR----------QRKFAIASAIAATAVVPLVQARGhvlgevkEvpIVvvdavqeIKRTRD 163
BAN66180      96 RAGGMYAPTRVwRRWHRKVNLK----------EKRQALASALAATAVVPVVMSRGhriealrEvpMVvddaieqINKTKD 165
XP_676211     97 RGGGMFNPTKIwRRWGRKVNLK----------EKRYAVCSSIAASGISSLVLARGhrisnlkEvpLVasndiesIQKTKD 166
Q3SEA6        98 RKGRMSLPIKVwRRWHRRVNIK----------QKRHAAATAVAATGIVPLVLARGhrisqvpQipLVvedkiesYEKTTD 167 Paramecium tetr...
XP_001388335  98 RGGHMFSPNKTyRRFHRKINTT----------EKRHAVAAAIAATGCPSLVMARGhrinnvpElpLVisneiqnINKTST 167
5OOM_F       203 LTELAHYr-----------------RW------------GDSVLLVDL---THEEmpqSIVEATSRLKTFNLIPAVGLNV 250 human
A0DT47       172 LVQLMKGf-----------------ESf-----------TQPLLIVTSv--DPDD---LFLRASRNLDSLETCTVKEFNI 218 Paramecium tetr...
EDL45215     265 AVKYLRNi----------------lGNn-----------CNSALLVHEgktDVND---NFFWACANIASVKRENVQGVNI 314
Q4UI83       243 AVQNLRRi----------------lGDr-----------CNSALLVFEglsDSNE---NFRWSTANIPSVRRETVEGVNV 292 Theileria annulata
Q8SRC2       164 AVEILRNlnmteelk--rveksrgvRCgkgkmrnrrytqRKGILIVHG---ESS-----EMLGFRNIRGVDQMSIDSLDL 233 Encephalitozoon...
XP_001324688 164 AVELLKKvgvygdvq--rvldgsvhRSskgkfrraayktKKGPLVIY----NEDK---GIVKAFRNIPGVETISVKALAL 234
BAN66180     166 AVKLLETiglgaelkridk--------vtgrardgrkkrPVGPLIILR---ATAV---EGKRAFRNIPGVEVACVERLNL 231
XP_676211    167 ALKFLISlglrdevn--rlikskkiRAgkgkmrnrkykiSNGPLIIY----NKDS---GIKKAFRNIPGVDLCNVTKLNL 237
Q3SEA6       168 ALNFLKRfgafedvq--kvvstkvvRAgiskqrgkkyrvRKGPLVVYF---NENA---KLLKAFRNVPGVEVVNVTRLNL 239 Paramecium tetr...
XP_001388335 168 AVEFFKNfgkgleeemkriessiaiRCgkgkmrnrrrvcAVGPLVVY----AEDN---GIVKAMRNIKGVDTCSVERLNL 240
5OOM_F       251 HSMLKHQT----LVLTLPTVAFLEDK 272 human
A0DT47       219 IKILKFKS----ILITKEAILQLTES 240 Paramecium tetraurelia
EDL45215     315 YNLLKYRF----VVFTYKALQNLTYE 336
Q4UI83       293 YNLLKYRQ----LVITQSALRKLIYY 314 Theileria annulata
Q8SRC2       234 LELAPGGVagrlIIWTESAFEKLDKI 259 Encephalitozoon cuniculi
XP_001324688 235 AKLAPAAQvgrlTVWTESAFKALDGI 260
BAN66180     232 LKLAPAGAlgrlCVWSKSAFEALDDY 257
XP_676211    238 LKLAPGGSigrlCIWSEDAFKKLDVI 263
Q3SEA6       240 LQLAPGGQlgrfVIWTQSAFAHLDKL 265 Paramecium tetraurelia
XP_001388335 241 LRLAPGGTfgrlTIFTKGAIKRLQEI 266
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