1H3O,6HQA,6MZC,6T9I


Conserved Protein Domain Family
HFD_TAF12

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cd07981: HFD_TAF12 
histone-fold domain found in transcription initiation factor TFIID subunit 12 (TAF12) and similar proteins
TAF12, also called TATA Binding Protein (TBP) associated factor 12, transcription initiation factor TFIID 20/15 kDa subunits, TAFII-20/TAFII-15, or TAFII20/TAFII15, is a TBP-associated factor (TAF). TAFs are components of the transcription factor IID (TFIID) complex, PCAF histone acetylase complex, and TBP-free TAFII complex (TFTC). TIIFD is multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. TFIID and PCAF are composed of TATA binding protein (TBP) and several TAFs. TBP is not part of TFTC. TAFs are essential for mediating regulation of RNA polymerase transcription. TAF12 interacts with TAF4 and makes a novel histone-like heterodimer that binds DNA and has a core promoter function of a subset of genes. It is important for RAS-induced transformation properties of human colorectal cancer cells; its levels are increased in the cells harboring the RAS mutation. Also, TAF12 interacts with activating transcription factor 7 (ATF7) and contributes to the hypersensitivity of osteoclast (OCL) precursors to 1,25-dihydroxyvitamin D2 (1,25-(OH)2D3; also known as calcitriol) in Paget's disease (PD), a disorder of the bone remodeling process, in which the body absorbs old bone and forms abnormal new bone.
Statistics
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PSSM-Id: 467025
Aligned: 86 rows
Threshold Bit Score: 67.1671
Created: 1-Oct-2008
Updated: 27-Apr-2023
Structure
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Program:
Drawing:
Aligned Rows:
 
heterodimeroligomer
Conserved site includes 28 residues -Click on image for an interactive view with Cn3D
Feature 1:heterodimer interface [polypeptide binding site]
Evidence:
  • Comment:human TAF12 forms H2B-like histone fold and interacts with TAF4
  • Structure:1H3O; Homo sapiens TAF12 makes a histone-like heterodimer with TAF4, contacts at 4A
  • Structure:6MZC; Homo sapiens TAF12 makes a histone-like heterodimer with TAF4, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        ####   #   #  ##                  #  ### ###  ##  #  #        ###  ##  #   # # #
1H3O_B         3 HXVLTKKKLQDLVREVDPne-----qLDEDVEEXLLQIADDFIESVVTAACQLARHRKSs-tLEVKDVQLHLERQWNXWI 76  human
CDW79005     102 NQLIGPIDIKGLTQKISTke-----vFDNQVEKTLAHLADDFVKTVAEFSCKLAKHRGSe-tLEKEDIKFAIEKLYNISI 175 Stylonychia lemnae
KII73169       9 SRIVSRANLMEILTELDQhe-----mIEESGQDLIIDFADVLVREVVKSACETAVIRKSs-eLTSKDISFVLEKYYKVYV 82  Thelohanellus k...
XP_011397303 397 KAFLPRTRAQKLVKDVCGpr----vkATPSLIAALKQLAEEFVAGGIAFGLSLACQRQSe-sLEAADLQLYYQRCWDIHV 471 Auxenochlorella...
XP_013906289  35 GKILPRSQLDRLMRMHGLdqt---frLAPDVQSELSRLAEDFVADLVERGCQLAVMRKAt-tLRASDLAPYLERTHHIRV 110 Monoraphidium n...
OMJ70214       3 ESIINRKELQQIYKRGLS--------FDTSAEDLLVKLGEDFFIRVLELACKSANAREGs-aLEIEDIKLVLEKYWDIKV 73  Stentor coeruleus
PNW75536     220 RRLLPRRGMRMALRAAGLen----hvMDPATEAALVEFYTEWVSNAVALGCEAAKRRKSggvLKARDIALHLERSWNLAI 295 Chlamydomonas r...
PSC73890     267 KQFAPRQRLQALVRQVGLplsltnarASEEAEGALQKVAEDFVSGAISFAVSMARRRKSe-eVEPADLLLYLERTWNIQV 345 Micractinium co...
AAV33345      63 YDIISKTNMLQFVQKIDAns-----sLDDQGCDMMARIADAFVNDVSMRMVKLAKYRKSd--VSVLDLKFILKREFNMEF 135 fruit fly
OAG28978      98 DPLEERIEIADLLREMGLdp-----rVDPEVKKVLLGGADIFIDNFIATSCSIARNKGQe-dVTKEDIILAMKMERHTEM 171 Nematocida disp...

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