1VS6,1P85,2GHJ,1NKW,1PNU,2J01,2FTC


Conserved Protein Domain Family
Ribosomal_L20

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cd07026: Ribosomal_L20 
Click on image for an interactive view with Cn3D
Ribosomal protein L20
The ribosomal protein family L20 contains members from eubacteria, as well as their mitochondrial and plastid homologs. L20 is an assembly protein, required for the first in-vitro reconstitution step of the 50S ribosomal subunit, but does not seem to be essential for ribosome activity. L20 has been shown to partially unfold in the absence of RNA, in regions corresponding to the RNA-binding sites. L20 represses the translation of its own mRNA via specific binding to two distinct mRNA sites, in a manner similar to the L20 interaction with 23S ribosomal RNA.
Statistics
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PSSM-Id: 197305
Aligned: 104 rows
Threshold Bit Score: 76.3689
Created: 8-Jan-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 54 residues -Click on image for an interactive view with Cn3D
Feature 1:23S rRNA binding site [nucleic acid binding site]
Evidence:
  • Structure:1VS6: In the 50S ribosomal subunit of the Escherichia coli ribosome, L20p binds to23S rRNA, contacts at 4 A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        ###### ####    ######## ####  ##   ##  ############### ###  #   #      ##  ##  #
1VS6_Q         6 RGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNgi-sYSKFINGLK 84  Salmonella ente...
XP_002113502   5 GSVDRSIRRAKIFALTKGFRGRSKNCYSLAIRAAHKALQHAYRGRKLKKRDFRSLWITRISNAAQEQkm-pYSMFMHNMV 83  Trichoplax adha...
XP_001630524   5 GPADRAVKRARIFALAKGFRGRSKNCYSIAIRRVQKALQYQYTSRRLKKRDMRSLWITRINIAGREHni-nYSTLVHKMA 83  starlet sea ane...
NP_001038824  13 RGPDRYWKVQELLKNARHFRGRKSRCYSLAVRAVRRAFVYASKARKAKRRSMRQLWITRIAAATREHgl-kYPALVHQLL 91  zebrafish
XP_001179060  13 RGPDRYWRKRFYLDQSTQYFGRRRNCFSVAVRAVRRAWQNSTAGRKKKKGQMRRLWNLRISAAVQEHgl-tYGPFIGNLL 91  purple urchin
NP_524051     13 RGPDEFWRKRRIFKLAAHYRSRTRNVYSFAIRSVHRALAYATKGRKLKKLDMAQLWSTRVEAGCQQYgv-gLETFKEGLA 91  fruit fly
EEC16122      14 SGGNRFWKRKRIFQLAANFYGRRRNCFTIAIRSVEKALTHVAEGRQVKKTEMGRLWKTRTEAAAQELgf-nYANLRHNLT 92  black-legged tick
EEB17964      19 AGTDRFWRKRKILKFAAHFVGRHQNCYSIAIRRVIRALTNSCKSRNVKNEVRKELIQTRLNAACEEHgl-pYPYLKESLI 97  human body louse
AAP06111      16 MPCDRWFKRNNLMKFAFFFKGRTARCPKLGVNRVVRAFQYAKDLREVRRKEIKSLWMERLEIASEQCglpsAKALCEGLS 95  Schistosoma jap...
NP_496817     24 PKPDVWMKRERLNRFTAWQYASERSTVKGAYRKEDKIFAYLNMQRQDERNLEKFHAEERVRTALEEHdm-eYSKFKSILS 102 nematode
Feature 1               ###                 
1VS6_Q        85 KAsvEIDRKILADIAVFDKVAFTALVE 111 Salmonella enterica subsp. enterica serovar Typhi
XP_002113502  84 RLevQLNRKILSELAIYEPRSFQALAD 110 Trichoplax adhaerens
XP_001630524  84 KLdiQLNRKMLSEIAIHEPRSFKGLAS 110 starlet sea anemone
NP_001038824  92 KCsvLLNRRMLCDLSITEPRSFLSLCR 118 zebrafish
XP_001179060  92 KHniRLDRKVLSHIAIYEPKTFKCLAE 118 purple urchin
NP_524051     92 RSdiLLNKKVLSDLAIWEPRSFEALVK 118 fruit fly
EEC16122      93 KCsiALDRRILSDLAYSEPRTFKSLVN 119 black-legged tick
EEB17964      98 RSniLLNKKILVDLAIWEPRTFKSITY 124 human body louse
AAP06111      96 QSniALNKNMLQILSIYEPRTFSALVD 122 Schistosoma japonicum
NP_496817    103 QShiLLDNICLSQLAIYEPRSFRSLVA 129 nematode

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