Conserved Protein Domain Family
CD9_LEL

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cd03152: CD9_LEL 
Tetraspanin, extracellular domain or large extracellular loop (LEL), CD9 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD9 is found in virtually all tissues and is potentially involved in developmental processes. It associates with the tetraspanins CD81 and CD63, as well as with some integrin, and has been shown to be involved in a variety of activation, adhesion, and cell motility functions, as well as cell-cell interactions - such as during fertilization.
Statistics
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PSSM-Id: 239405
Aligned: 10 rows
Threshold Bit Score: 117.489
Created: 4-Nov-2005
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
dimer interface
Feature 1:dimer interface [polypeptide binding site]
Evidence:
  • Comment:dimeric assembly observed in the CD81 crystal is predicted to resemble quaternary structure of intact CD81 at the cell surface

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #    #   # ##  #               #  ##  ##                                       
NP_990093    109 FANKEKIVEELQDFYRETYEKRsq---paAREILKAFHFALNCCGITGGleqQLMESCPKKtlpe-sfttMPCPKAIDDV 184 chicken
AAH11988     111 YSHKDEVIKEVQEFYKDTYNKLktk-depQRETLKAIHYALNCCGLAGGveqFISDICPKKdvle-tftvKSCPDAIKEV 188 human
AAN63554     109 YVMSDEVGKQVAIFYTTVYAQYldkqdpgLAVTLSMFHNVLHCCGLLGGldlLVKITCPITgflg-tlavPACPTVIINL 187 Atlantic salmon
AAH65427     107 IMQSGKVSDELVEFYSTVYAQYlntrsasQAVSLKMFHDAFDCCGVGGSielFVRDTCPDGnilk-qltfPSCPSVIKDV 185 zebrafish
AAH71132     109 FTNKDKVVDELKTFYRETYAKYiqtkdssLKETLKGIHFAFDCCGNNGVldaALTDICPNNqgilsalsaRSCPAVIDEV 188 African clawed ...
AAH59691     109 FSNQTKVTEDITTFYRQTYDTYqqskqeaLKKTLRLFQHGLNCCGPSGNmqeSLDETCPKKegld-nliiKSCPDAIDEV 187 zebrafish
CAG13072     109 FSNQTKVVNDITTFYKQTYNTYrtnrdprLKETLRVIQTGLDCCGPTGTvidDAKDTCPSRdlle-qlitKSCPDAIEDV 187 Tetraodon nigro...
AAH49036     109 LSNKDKIVSDVQQFYTQTVKNYkespdgpLKETLTAIHFSLQCCGPTGLasdGVSVTCPKQegla-nvitTGCSSVIQDM 187 zebrafish
NP_776325    109 YSHKEEVIKEVQKFYEDTYNKLknk-depQRETLKAIHIALDCCGLTGVpeqFLTDTCPPKnlid-slktRPCPEAIDEI 186 cow
NP_001016989 109 FTNKDKVVDELKTFYKDTYTKYmksndnaLKDTLKAIHLALNCCGMTGVleaTVTDICPNNqgivgalsaQSCPAAIEDV 188 western clawed ...
Feature 1             
NP_990093    185 FNSKL 189 chicken
AAH11988     189 FDNKF 193 human
AAN63554     188 LESKA 192 Atlantic salmon
AAH65427     186 FNSNA 190 zebrafish
AAH71132     189 FTSKL 193 African clawed frog
AAH59691     188 FNSKL 192 zebrafish
CAG13072     188 FDSKL 192 Tetraodon nigroviridis
AAH49036     188 FNSRL 192 zebrafish
NP_776325    187 FRSKF 191 cow
NP_001016989 189 FTTKF 193 western clawed frog

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