Conserved Protein Domain Family
CH_CYTS

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cd21199: CH_CYTS 
calponin homology (CH) domain found in the cytospin family
The cytospin family includes cytospin-A and cytospin-B. Cytospin-A, also called renal carcinoma antigen NY-REN-22, sperm antigen with calponin homology and coiled-coil domains 1-like, or SPECC1-like (SPECC1L) protein, is involved in cytokinesis and spindle organization. It may play a role in actin cytoskeleton organization and microtubule stabilization and hence, is required for proper cell adhesion and migration. Cytospin-B, also called nuclear structure protein 5 (NSP5), sperm antigen HCMOGT-1, or sperm antigen with calponin homology and coiled-coil domains 1 (SPECC1), is a novel fusion partner to PDGFRB in juvenile myelomonocytic leukemia with translocation t(5;17)(q33;p11.2). Members of this family contain a single copy of the CH domain. CH domains are actin filament (F-actin) binding motifs.
Statistics
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PSSM-Id: 409048
Aligned: 15 rows
Threshold Bit Score: 220.31
Created: 8-Oct-2019
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
putative actin
Feature 1:putative actin binding site [polypeptide binding site]
Evidence:
  • Comment:Based on the structure evidence that Homo sapiens filamin-A binds F-actin.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                 #   #                                                 # ##  ## #       #
Q69YQ0       1005 LAREYGGSKRNALLKWCQKKTEgyqniditNFSSSWNDGLAFCALLHTYLPAHIPYQELnsQDKRRNFMLAFQAAESvGI 1084 human
ELT90584       12 LAKQMGGSKRNALLKWCQNKTNaysniditNFSSSWNDGLAFSALMHSYLPDKIPYRELteEDKMRNFSLAFKAAESvGI 91   Capitella teleta
XP_002596646    2 VKRERGGSKRNALLKWCQRKTQgytgidvtNFSTSWNDGLSFCALLHSYLPEKVPFSELtaQNKRKNFTTAFQAGESvGI 81   Florida lancelet
GBL76773      890 TLVKGGGSKRNALLKWCQNKALgykgiditNFSSSWNDGMAFCALLHSYLPHLIPYDELdsKDKRRNFTLAFQAAESvGI 969  Araneus ventr...
XP_002730878  770 LVKEKGGSKRNALLKWCQEKTQgykgiditNFSSSWNDGLAFCALLHNYLPQKIPYYELnnTDKKRNFKLAFEAAESvGI 849  Saccoglossus ...
NP_001284746  837 MLAKNGGSKRNALLKWCQNKTVgyrniditNFSSSWNDGLAFCAILHSYLPDRIPYDQLtpANKRRNFSLAFAAAESvGI 916  fruit fly
XP_013412077 1030 LAKQMGGSKRNALLKWCQQKTLahrgiditNFSSSWNDGLAFCALLHSYMPDKIPYNELnsHDKRRNFTLAFKAAEKvGI 1109 Lingula anatina
EFX79572      691 GLVKNGGSKRNALLKWCQTRTAdypniditNFSSSWNDGLALCALLHTYLPQQVPFESLtsSDVRHNFQVAFRASESvGI 770  common water ...
PVD32876     1066 LAKQMGGSKRNALLKWCQQKTLaysgvditNFSSSWNDGLAFCALLHSYLPDKVLYSTLnsDDKRKNFTLAFSAAESvGI 1145 Pomacea canal...
PAA82627      909 LAKRHGGSKRNGLLRWCQSCLAgyphtevtNFSSSWNDGMAMCGLLHRYLPDRVPYAQLtpEDKRRNFLVAFKAAESaGI 988  Macrostomum l...
Feature 1         ########       # ## ##  ##  #   
Q69YQ0       1085 KSTLDINEMVrtERPDWQNVMLYVTAIYKYFE 1116 human
ELT90584       92 PSTLNLSDMVamERPDWQAVMHYITSIYKHFE 123  Capitella teleta
XP_002596646   82 PTMLSADELVqtERPDWQAIMAYVTAIYAKFE 113  Florida lancelet
GBL76773      970 PTTLNINDLIsqERPDWQSIMSYVTAIYKHFE 1001 Araneus ventricosus
XP_002730878  850 TSILAADDMAsmERPDWQSIMTYVSAVYKHFE 881  Saccoglossus kowalevskii
NP_001284746  917 GTTLNINDMCqiERPDWMQVMSYVTAVYKYFE 948  fruit fly
XP_013412077 1110 PSTLSISEMAatERPDWMQVMAYVASIYKHFE 1141 Lingula anatina
EFX79572      771 PTSLDIEELAssDRPDWQSIMTYITAIYKHFE 802  common water flea
PVD32876     1146 PTSLSLNEMVamERPDWQAVMAYVTNIYKHFE 1177 Pomacea canaliculata
PAA82627      989 KTTLSLDDMVsvERPDWNAVMSYVASIYVRFE 1020 Macrostomum lignano

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