3CT9


Conserved Protein Domain Family
M20_ArgE_DapE-like

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cd05651: M20_ArgE_DapE-like 
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M20 peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases
Peptidase M20 family, uncharacterized protein subfamily with similarity to acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) subfamily. ArgE/DapE enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this subfamily are bacterial, and have been inferred by homology as being related to both ArgE and DapE.
Statistics
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PSSM-Id: 349902
Aligned: 13 rows
Threshold Bit Score: 521.099
Created: 31-Oct-2007
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
metal bindingdimer interface
Conserved site includes 6 residues -Click on image for an interactive view with Cn3D
Feature 1: metal binding site [ion binding site], 6 residue positions
Conserved feature residue pattern:H D E E E HClick to see conserved feature residue pattern help
Evidence:
  • Comment:annotation is based on similarity to other subgroups

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                      #              
3CT9_A     12 EAVSLLKSLISIPSISREEtQAADFLQNYIEAEGXqTGRKgNNVWCLSPxfd---lkKPTILLNSHIDTVKPvngWRKDP 88  Bacteroides thetai...
EFR57658    7 EAVELLRRLIATPSTSRDEsRTADLLFAFLEERGAaPERLhNNVFARSAdfd---paRPTLLLNSHHDTVRPaasYTRDP 83  Alistipes sp. HGB5
ADQ18399    5 SPVAFLQKLISTPSFSREEdGVCQLFINLFEEKNIpFERVkNNLWTKNKffd---pqKPSILLNSHYDTVKPnagYTKNP 81  Leadbetterella bys...
ADR21524   12 KAIDLLKELITIPSFSKEEhETANSIGNFLKHQGIeFNRMgNNIIAYNLhfd---kqKPSILLNSHHDTVKPnagYTKNP 88  Flexibacter tractu...
EFU31049   10 EAVTLLSHLIATPSISRNEqAAADLMETALRTYGFaPRREaNNLWAIAPhfd---eqRPTVLLNAHIDTVKPvasWTRDP 86  Prevotella buccae ...
ABQ06442   10 EAISLLRSLIETPSFSSEEdQTALLIENWFNQNEIpFKREnNNVWAFNKyfd---enKPTLLLNSHHDTVRPnqaYTNDP 86  Flavobacterium joh...
ACU07336    7 DARNFLIELIETPSFSREEeNTALIIEKYLNLKNIpFQRKgNNIWAKNLqfd---enLPTVLLNTHHDTVKPnsaYTLDP 83  Flavobacteriaceae ...
ACX83943   12 EAIQLLIKMINTPSISKQEkKVSFLIEDYLSRYGFhIKRKfNNIWTENTnydakkenIRTILLNSHHDTVKPgknWKTNP 91  Blattabacterium sp...
ABS30530   12 ECIKLLKKLISTPSLSKEEhKTADIIESFLRKKKLnPKRKdNNIWIENHnyd---ndNYTILLNSHHDTIKPstgWETDP 88  Candidatus Sulcia ...
EFK35318   16 NAVGLLKNLIEIPSFSKDEfNTSVEIENFFKKHQIpTKRFkNNIWAVNKhfd---vfKPSVLLNTHHDTVKPnkaYTLDP 92  Chryseobacterium g...
ABF88318    2 TAAELLQALVAIPSVSGDEgRIADTVSGWAEGWGArVQRQgHNVWFSVGs------gPRRLLINSHLDTVKPcagWTYEP 75  Myxococcus xanthus...
ACY48508   12 EVIELLKSLVRFPSLSHQEaEIADFVEHYVRQAGLpVRRMdNNVYFWLGe------gEDRLLLNSHLDVVPPsadHPFDP 85  Rhodothermus marin...
CUN45013   11 EAIGLLKSLIAIPSLSRDEeKAADYLQNYIEMQGMaTGRKgNNVWCLSPmfd---lkKPTLLLNSHIDTVKPvngWRKDP 87  Catenibacterium mi...
Feature 1                      #                                  ##                        # 
3CT9_A     89 FTPRe-eNGKLYGLGSNDAGASVVSLLQVFLQLcrt---sqnYNLIYLASCEEEv-SGKEGIESVLPglpPVSFAIVGEP 163 Bacteroides thetai...
EFR57658   84 FTPTa-eGDRLYGLGSNDAGASVVSLARTFLTFreq---slpFNLLLALSAEEEc-MGEHGMRALLPqlgTIDMALVGEP 158 Alistipes sp. HGB5
ADQ18399   82 FEPEi-hGDILYGLGSNDAGGPLVSLAATFFHFyhre--dlaYNLIFAISAEEEi-SGKDGIEYLLKylpPCELAIIGEP 157 Leadbetterella bys...
ADR21524   89 FEAIe-qNGKLYGLGSNDAGGSLVSLLATFIHFysq---eitDNLIFVASAEEEi-SGKNGISSVLEhipKCELAIVGEP 163 Flexibacter tractu...
EFU31049   87 FAPTr-eGDTLYGLGSNDCGGGLVSLLQAFRILsam---prnYNLIYLASAEEEv-SGQDGISRALPllpPIDVAIVGEP 161 Prevotella buccae ...
ABQ06442   87 FKAIe-kDGKLFGLGSNDAGGCLVSLLATFVHFyenq--nlsHNIVIVASAEEEs-SGKNGLNSVLKslpELDCAIVGEP 162 Flavobacterium joh...
ACU07336   84 FEAVq-kEGKIFGLGSNDAGASLVSLWAVFTHFyav---klkYNLIYATTAEEEi-SGENGVKSILEdlgKIDFAIVGEP 158 Flavobacteriaceae ...
ACX83943   92 FTAIk-qGDKLIGLGSNDAGASVVSLISTFIYLnsfs--vlpYKLVLSLTAEEEi-SGPLGVRSILSelgKIDLGIIGEP 167 Blattabacterium sp...
ABS30530   89 FIAKe-yGNKIIGLGSNDAGGSVVSLIATFIYInslp--kykYKLILIISAEEEi-RATRGVESILCylgKLNLGIIGEP 164 Candidatus Sulcia ...
EFK35318   93 FVPIe-kEGKLFGLGSNDAGASLVAMAHVFLHFydke--dlkYNLVIALTAEEEi-SGFDGIEALFPqlpNVELAIVGEP 168 Chryseobacterium g...
ABF88318   76 HAPVw-rEDRLYGLGSNDAKGCVTGMLLAARTLlteg-aptgAEVVFAFTAEEE--TGGQGLGTLLPklgPLDAAIVGEP 151 Myxococcus xanthus...
ACY48508   86 FEPVe-vDGKLYGRGTVDAKASGAAMTTALLSLaregwrppnGQVIVALTACEEtgGGYNGLEALRPhlpPLQAAIVGEP 164 Rhodothermus marin...
CUN45013   88 FKPTlesNGKLYGLGSNDAGASVVSLLQVFLTLcrt---tqaYNLIYLASCEEEv-SGKGGIECVLPelpPIQFAIVGEP 163 Catenibacterium mi...
Feature 1                                                                                     
3CT9_A    164 TeXQPAIAEKGLXVLDVTATGKAGHAARDE---GDNAIYKVLNDIAWFRDYRFEKeSPLLGpVKXSVTVINAGTQHNVVP 240 Bacteroides thetai...
EFR57658  159 TgMQAAVGERGLVVLDCEARGKSGHAARNE---GINALYIALDDIARLRSFRFDRvSELLGpIGIAVTQIAAGTQHNVVP 235 Alistipes sp. HGB5
ADQ18399  158 TlMQMAIAEKGLMVLDCKATGKAGHAAREE---GINAIYKALEDVQWFKDFEFPKlSETLGkVKMSVTQIQAGTQHNVVP 234 Leadbetterella bys...
ADR21524  164 TeMKMAVAEKGLLVIDAVAIGKAGHAARNE---GENAIYNAMEDILKIKDFKFKKcSNYLGeNKVSATIIKAGQQHNVVP 240 Flexibacter tractu...
EFU31049  162 TgMQPAVAEKGLMVLDLTARGKSGHAARNE---GVNAIYEALDDLLWLRDYRFERvSEFLGpTKMTVTVVNAGTQHNVVP 238 Prevotella buccae ...
ABQ06442  163 TlMQLAVAEKGLLVLDVKVKGTASHAAHQN---DDNALYKSIPVMEWFKNYKFDKiSDVLGpVKMTVTQINAGKQHNVVP 239 Flavobacterium joh...
ACU07336  159 TkMDLAIAEKGLVVLNCVAKGTASHAAHTN---EDNSIYKAVRDIQKVQNFEFDKvSEVLGkVRATVTIINAGSQHNVVP 235 Flavobacteriaceae ...
ACX83943  168 TkMQVAIAEKGLVVLDCLAEGKTGHSARDI---GVNAIYIATKDIECLRNLQFDRkSKLLGyPTLTVTQIQGGIQHNVIP 244 Blattabacterium sp...
ABS30530  165 TnMQMAIAEKGLIVLDCLSIGTTGHAARFE---GINALYLAIDDIIWLKNYVFKKkSPILGnIKLTVTKIQCGIQRNVIP 241 Candidatus Sulcia ...
EFK35318  169 TqMNLAIAEKGLLVIDGEMKGTPSHAAHPN---DDNSIIKCMQDLQNILAFKFPKvSEYLGeVKVTLSGIHAGVQHNVVP 245 Chryseobacterium g...
ABF88318  152 TsLKPCTAQRGMLLLRCTAHGKSAHVAHAHateAVNAIHLAATDIAVLAELRFPS-HPLLGeARAQVTQVSGGLARNQVP 230 Myxococcus xanthus...
ACY48508  165 TcLQPCVAQKGLLILKLHARGRTAHAARPHl--GDNAILRAARDIQRLSRFRFDRaDPFLGaPTLTVTTIQGGTAHNVVP 242 Rhodothermus marin...
CUN45013  164 TeMQPAIAEKGLMVLDVTATGKSGHAARNE---GDNAIYKVLDDIAWFRDYRFPKeSSLLGpVKMSVTMVNAGTQHNVIP 240 Catenibacterium mi...
Feature 1                                                                                     
3CT9_A    241 DKCTFVVDIRSNElysNEDLFAEIRKHIaCDAKARSFRLNSSrIDEKHPFVQKAVKXGr--IPFGSPTlSDQALXs-FAS 317 Bacteroides thetai...
EFR57658  236 DSCRFVVDLRTTDaytNEETVEILRGALrSQAAPRSTRIRASaLDAAHPLARAAQAAGr--RSYVSPTtSDMALMp-FPS 312 Alistipes sp. HGB5
ADQ18399  235 DVCTFVVDVRATDaysLEETLDIIKQNVrSEVTPRSIRLQPSgIPLDHPIVKKGIALGl--GTYGSPTlSDQALIp-FTS 311 Leadbetterella bys...
ADR21524  241 DSCEFTMDVRVTDaytLEEAFEEIQSQLnAKLIARSFRLQSSfLPENHKMMEVAHALGl--EKFGSPTlSDQALIp-FDS 317 Flexibacter tractu...
EFU31049  239 DRLTALIDVRTNElytNEEVFDIVRCHCkSTITAHSFRLHSSrIPTSHPLIRRCVALGl--TPFGSPTlSDQALMp-FPS 315 Prevotella buccae ...
ABQ06442  240 SECDLVVDIRVTDrytNAEILEVVKANVnAEVTPRSMHLNASsIPIEHGLVQAGIALGr--TTYGSPTlSDQSVLs-CQS 316 Flavobacterium joh...
ACU07336  236 DQCHFTIDVRTNEhysNSEILEIFTNELeSEIQPRSLALNSSkINLDHPFVFAAQKENc--SLYGSPTvSDQALMp-FDS 312 Flavobacteriaceae ...
ACX83943  245 DSCSFVIDIRTNElytNEELIEMIRKKIhSKMKPRSSHSNSSfINPSHPIVSKAKFIGr--KIYGSPTlSDQSIMs-FST 321 Blattabacterium sp...
ABS30530  242 DTCYFTVDIRTNEiysHEYIINKIKKNIkSKIISSSYRLKSSyIDPNHNIVKTAKNINi--QIFGSPTlSDQSVMn-FPT 318 Candidatus Sulcia ...
EFK35318  246 ESCNFTLDVRVTDeysNQEAFEIIQSQMkSTLTARSFRLNSSrIEMDHPFVKAGIEIGr--TTYGSPTsSDQAIIp-CTS 322 Chryseobacterium g...
ABF88318  231 DRCEFFVDLRTTPgmeHAMVARQVAGALkSEVKVHSERYLPKaTSAEQPIVRAAVAASg-aQPVGSSTaSDWAFLgdIPA 309 Myxococcus xanthus...
ACY48508  243 EHCTFTLDIRTTPaytHAEIVQLLAGVVeSEIEVHSDRFIPVaTPVDARIVQACLRANpgsRPFGSPTaSDWIFLhdIPT 322 Rhodothermus marin...
CUN45013  241 DRCTFVVDIRSNEcysNQELFDEIQKHItCEAKARSFRLSSShVAPEHPVVQKAIAMKr--TPFGSPTlSDQALMp-FPS 317 Catenibacterium mi...
Feature 1                #                      
3CT9_A    318 VKIGPGRssRSHTAEEYIxLKEIEEAIGIYLDLL 351 Bacteroides thetaiotaomicron VPI-5482
EFR57658  313 LKMGPGEssRSHTADEYVlLSEIGEGIGIYEEFI 346 Alistipes sp. HGB5
ADQ18399  312 IKIGPGDsaRSHTADEYIhISEILEGVRIYIELL 345 Leadbetterella byssophila DSM 17132
ADR21524  318 VKIGPGKseRSHTADEFIeLKEIEEGIKIYIQLL 351 Flexibacter tractuosus DSM 4126
EFU31049  316 FKLGPGEssRSHSADEFIrVSEIERAIHTYVELL 349 Prevotella buccae ATCC 33574
ABQ06442  317 LKLGPGEtlRSHSADEFIfVNEIVEGVDLYIKIL 350 Flavobacterium johnsoniae UW101
ACU07336  313 VKIGPGDstRSHTADEFIyQHELDEGIEKYIKIL 346 Flavobacteriaceae bacterium 3519-10
ACX83943  322 IKMGVGDskRSHTTNEYIhISEILDGIDIYIRLL 355 Blattabacterium sp. (Periplaneta americana) str. BPLAN
ABS30530  319 VKLGVGDssRSHTPNEYIlISEIEYGIDLYINLL 352 Candidatus Sulcia muelleri GWSS
EFK35318  323 VKIGPGDsrRSHTADEFIyIHEIEEGIEIYIRIL 356 Chryseobacterium gleum ATCC 35910
ABF88318  310 VKVGPGDtlRSHLADEFItRAELEAGAAFYTQLV 343 Myxococcus xanthus DK 1622
ACY48508  323 VKLGPGPseRSHTGGEHIeLDELVRAVRVYRDII 356 Rhodothermus marinus DSM 4252
CUN45013  318 LKMGPGKsaRSHTADEFIfVKEIEEAIGMYLELL 351 Catenibacterium mitsuokai

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