Conserved Protein Domain Family
parB_part

?
TIGR00180: parB_part 
ParB/RepB/Spo0J family partition protein
This model represents the most well-conserved core of a set of chromosomal and plasmid partition proteins related to ParB, including Spo0J, RepB, and SopB. Spo0J has been shown to bind a specific DNA sequence that, when introduced into a plasmid, can serve as partition site. Study of RepB, which has nicking-closing activity, suggests that it forms a transient protein-DNA covalent intermediate during the strand transfer reaction.
Statistics
?
PSSM-Id: 272946
Aligned: 13 rows
Threshold Bit Score: 186.046
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
AAA69865      56 TEHELIFVDPKECEPWEYANRQ----DEELGNINELIESIKSNKQLQPALIRKHPHphDDVKYEIIFGRRRHIACLNLG- 130 Plasmid QpH1
Q52313        41 GGAGPQELPLDLIDEDPHQPRTadnpGFSPESIAEIGETIKARGVKSPISVRENPD--APGRYLINHGARRYRGSKWAHk 118 Escherichia coli
P07674        49 GGSGPIELDLDLIDEDPHQPRTadnpGFSPESIAEIGATIKERGVKSPISVRENQE--QPGRYIINHGARRYRGSKWAGk 126 Escherichia coli
P26497        19 SEETVEEIKIADLRPNPYQPRK----HFDDEALAELKESVLQHGILQPLIVRKSL-----KGYDIVAGERRFRAAKLAGl 89  Bacillus subtil...
O25758        29 RANRVVELGIDEVMPNPYQPRK----VFSEDSLEELAQSIKEHGLLQPVLVVSEN-----GRYHLIAGERRLRASKLAKm 99  Helicobacter py...
Q50201        56 MGAVYREIALSDITENPCQPRQ----VFDDEAMSELVHSIREFGLLQPIVVRPASGscGDTRYQIVMGERRWRAAQQAGl 131 Mycobacterium l...
AAB51268      29 QFGGSREAPIEILQRNPDQPRR----TFREEDLEDLSNSIREKGVLQPILVRPSPD--TAGEYQIVAGERRWRAAQRAGl 102 Caulobacter cre...
P37524        26 NKEEILEIPVNAIVPNRFQPRT----IFSDEKIKELAMTIHTHGIIQPIVVRHTE---EEGQYELIAGERRWRAVQSLEw 98  Bacillus subtil...
AAA85481      46 VAQNLYFLSIDLLQTGKYQPRK----GWIKESLQELVNSIKSQGIIQPLIVRQIQT----NRYEIIAGERRWRAAKEAGl 117 Coxiella burnetii
O51395         1 MDGVFKMIDIHLLDIDNDQPRK----SVSLVELEELSISIKENGILQPLIVCKAN-----DRYKIIVGERRFRAAKLIQl 71  Borrelia burgdo...
P11656        34 IPHKRIQDLTFVNQKTNVRDQE----SLTEESLADIIKTIKLQQFF-PVIGREID-----GRIEILDGTRRRASAIYAG- 102 Shigella flexneri
P08867        61 VLRGDSVEKTSRVWSGNERDQE----LLTEDALDDLIPSFLLTGQQTPAFGRRVS-----GVIEIADGSRRRKAAALTE- 130 Escherichia coli
XP_004253521  70 LAEGQAVIELDASSIEPSFVQ-----DRMRGDIDGLLTSIREQGQQVPILVRPHPS--QPGRYQVAFGHRRLRAVSELGl 142 tomato
AAA69865     131 IPFLAILKEIPNVqdaiAFQDAENKLRNDVSNYSNAILYKRLIEEgVFKKEKdLAEKLRLSPSTLNDLMAYTK-IPSAIV 209 Plasmid QpH1
Q52313       119 TTIPAFIDNDYNE----ADQVIENLQRNELTAREIADFIGRELAK-GKKKGE-IAKEIGKSPAFVTQHVTLLD-LPEPIA 191 Escherichia coli
P07674       127 KSIPAFIDNDYNE----ADQVIENLQRNELTPREIADFIGRELAK-GKKKGD-IAKEIGKSPAFITQHVTLLD-LPEKIA 199 Escherichia coli
P26497        90 DTVPAIVRELSEAlm-rEIALLENLQREDLSPLEEAQAYDSLLKH-LDLTQEqLAKRLGKSRPHIANHLRLLT-LPENIQ 166 Bacillus subtil...
O25758       100 PTIKAIVVDIEQEkm-rEVALIENIQREDLNPLELARSYKELLES-YQMTQEeLSKIVKKSRAHVANIMRLLT-LSSKVQ 176 Helicobacter py...
Q50201       132 SFIPAIVRATGDDsm-lRDALLENIHRVQLNPLEEAAAYQQLLDE-FEVTHDeLASRIGRSRPLITNMIRLLK-LPIPVQ 208 Mycobacterium l...
AAB51268     103 KTVPIMVRELDDLav-lEIGIIENVQRADLNVLEEALSYKVLMEK-FERTQEnIAQTIGKSRSHVANTMRLLA-LPDEVQ 179 Caulobacter cre...
P37524        99 EKIPAIIKDFSDTet-aSVALIENLQREELSSIEEAHAYARLLEL-HDLTQEaLAQRLGKGQSTIANKLRLLK-LPQPVQ 175 Bacillus subtil...
AAA85481     118 KKVPAIIRNVDDTta-lAFALIENIQRENLNPIDEALAFSRLRDE-FSMSHAaISETVGRSRTAVTNILRLLS-LDDSVK 194 Coxiella burnetii
O51395        72 TNIPVIEVDIKESck-dFMPLVENIQRENFTPVEEAYAYKNIMNK-YSLTQKdLSEKIGKSRTYISNLVRILD-LEQEIL 148 Borrelia burgdo...
P11656       103 ADLEVLYSKEYIStl-dARKLANDIQTAKEHSIRELGIGLNFLKV-SGMSYKdIAKKENLSRAKVTRAFQAAS-VPQEII 179 Shigella flexneri
P08867       131 SDYRVLVGELDDEqm-aALSRLGNDYR-PTSAYERGQRYASRLQNeFAGNISaLADAENISRKIITRCINTAK-LPKSVV 207 Escherichia coli
XP_004253521 143 -PVRAVVRELTDEqv-vVAQGQENNEREDLTFIEKARFAHRLNRQ-FSREIViAAMSIDKS--NLSKMLLLVDaLPSELT 217 tomato
AAA69865     210 KKIPNIHALSKSIVLKIVQLLNKSSKnhaKLIAIAP 245 Plasmid QpH1
Q52313       192 EAFNSGRGKDVTVINELVTAYKKNPD---EVAAWLA 224 Escherichia coli
P07674       200 DAFNTGRVRDVTVVNELVTAFKKRPE---EVEAWLD 232 Escherichia coli
P26497       167 QLIAE--GTLSMGHGRTLLGLKNKNKlepLVQKVIA 200 Bacillus subtilis subsp. subtilis str. 168
O25758       177 NALLE--EKITSGHAKVLVGLDG-EKq-eLILNSII 208 Helicobacter pylori 26695
Q50201       209 RRVAA--GVLSAGHARALLSLEANPEvqeELASRII 242 Mycobacterium leprae TN
AAB51268     180 SYLVS--GELTAGHARAIAAA-ADPv---ALAKQII 209 Caulobacter crescentus CB15
P37524       176 EAIME--KKITERHARALIPLKQ-PElqvTLLTEII 208 Bacillus subtilis subsp. subtilis str. 168
AAA85481     195 VLLQT--DKLEMGHARALLTLPK-DQq-iLFAQKII 226 Coxiella burnetii
O51395       149 NAIHR--KEISFGHAKVILSLKDRQDr-yNLYLIIL 181 Borrelia burgdorferi B31
P11656       180 SLFPIASELNFNDYKILFNYYKGLEKaneSLSSTLP 215 Shigella flexneri
P08867       208 ALFSHPGELSARSGDALQKAFTDKEEllkQQASNLH 243 Escherichia coli
XP_004253521 218 DAIGAAPGVGRPSWQQLAELIEKVSSp-aDVAKYAM 252 tomato
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap