1S72,1S1I,2FTC,1J3A,1P85,1NKW


Conserved Protein Domain Family
Ribosomal_L13

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cd00392: Ribosomal_L13 
Click on image for an interactive view with Cn3D
Ribosomal protein L13. Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the polypeptide exit site. It interacts with proteins L3 and L6, and forms an extensive network of interactions with 23S rRNA. L13 has been identified as a homolog of the human breast basic conserved protein 1 (BBC1), a protein identified through its increased expression in breast cancer. L13 expression is also upregulated in a variety of human gastrointestinal cancers, suggesting it may play a role in the etiology of a variety of human malignancies.
Statistics
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PSSM-Id: 238230
Aligned: 132 rows
Threshold Bit Score: 76.7745
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
23S rRNAL3 interface
Conserved site includes 24 residues -Click on image for an interactive view with Cn3D
Feature 1:23S rRNA interface [nucleic acid binding site]
Evidence:
  • Structure:1S72_J (Haloarcula marismortui): interface with 1S72_0 (23S rRNA), defined using 3.5 A contacts

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                  # ##  #  #   #                             # #        
1S72_J         9 DVIVDARD-----------------CIMGRVASQVAEQALD--------------GETVAVVNAERAVITGREeqiveky 57  Haloarcula mari...
XP_001433585  85 YHLFDASR-----------------FPYGKMCSKIAYHLSGkhkptfrnnepgkvTDKFIIVNGCNMYLTGKKinykvlt 147 Paramecium tetr...
NP_492067     23 WHVIDANQ-----------------QDAELLGDKVARYLAGkhkpif--hpetdcGDHVVVTNCKDIAMHAFDwkhtiyk 83  Caenorhabditis ...
EAS01666     453 YHIFDASK-----------------MPLGRMCQKIAFFLQGkhrptfk-ncdqvtYDNIIVVNAANIMLTGKKallktvk 514 Tetrahymena the...
AAM75966       6 QHVLDARG-----------------MVLGRLAVTVAGLLRGkykasy--ahnaapHNAVTVLNCEHVRISGSKavgkvyy 66  Candidatus Trem...
EAA33877      16 WHHISAVTphptlstikapseaitpPSLGRLASRIATILMGkhkpiw--dpstdcGDYVVVTNCAGLYTTGHKkwrktyy 93  Neurospora crassa
NP_186828     32 WRVFDARG-----------------QVLGRLASQISTVLQAkdkpty--cpnrddGDICIVLNAKEIGFTGRKltdkfyr 92  thale cress
XP_756555     16 WHAVSAKN-----------------RVLGPLAVNIAKLLMGkhkpiy--dqskdvGDYVVVTDAKQVVVTGRKadqrvyr 76  Ustilago maydis...
XP_502643      9 WHFVDVAKe---------------qRTLGRLATSIAQTLQGkhkpvy--ntghdcGDYVVVVNADKLRFSGSKlqqkeyf 71  Yarrowia lipoly...
Q12487        16 WHHVDVARd---------------kRTLGRLASAIAITLIGrhkpvy--hpsqdcGDYVVVTNCQKIRVTGKKfeqktyw 78  baker's yeast
Feature 1                                     ##     ### ### # ## # #   #  ##    
1S72_J        58 ekrv--------------digndngyfypKRPDGIFKRTIRGMLPhKKQRGREAFESVRVYLGN 107 Haloarcula marismortui
XP_001433585 148 yhtgyv----------ghlrqikfrdlilQKPEQLVAWTVSKMLP-NNVYRMDKLDHIHLFRGR 200 Paramecium tetraurelia
NP_492067     84 fnmeyp----------kskadipawqihdYDQCRIAFLSVYRSLG-NNLLRRRHIQRLHLFPDE 136 Caenorhabditis elegans
EAS01666     515 yhtgfvgglkeksykffltekpeqlvniyIQLVSKVFYCISKMLP-KNLKRRDLLKKVEIYRDF 577 Tetrahymena thermophila SB210
AAM75966      67 rhsghp----------gglrrtklhdlmlRSPATVLRAAVHGMLP-RNRLRDRFMSMLMVHANE 119 Candidatus Tremblaya princeps
EAA33877      94 rhntrpg---------slqaitmdalmekHGGAEVLRKAVSGMLP-KNRLRDKRLARLKAFEGD 147 Neurospora crassa
NP_186828     93 whtgyi----------ghlkerslkdqmaKDPTEVIRKAVWRMLP-SNNLRDDRDRKLRIFEGG 145 thale cress
XP_756555     77 hhtmyp----------gglkeikykemmeKKPEEIIRKAVSGMLP-KNTLRDRRLERLKIFDGE 129 Ustilago maydis 521
XP_502643     72 vqssqpg---------hshhvavkrvienQGVSEVLRRTVAGMLP-RNKLKRGRIARLKVFEGT 125 Yarrowia lipolytica CLIB122
Q12487        79 shsgrpg---------qlklqtmnkvvadKGFGEILKKAVSGMLP-KNKLRKQRLDRLKVFDGS 132 baker's yeast

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