4BEB


Conserved Protein Domain Family
hsdR

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TIGR00348: hsdR 
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type I site-specific deoxyribonuclease, HsdR family
This gene is part of the type I restriction and modification system which is composed of three polypeptides R (restriction endonuclease), M (modification) and S (specificity). This group of enzymes recognize specific short DNA sequences and have an absolute requirement for ATP (or dATP) and S-adenosyl-L-methionine. They also catalyse the reactions of EC 2.1.1.72 and EC 2.1.1.73, with similar site specificity.(J. Mol. Biol. 271 (3), 342-348 (1997)). Members of this family are assumed to differ from each other in DNA site specificity. [DNA metabolism, Restriction/modification]
Statistics
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PSSM-Id: 273028
Aligned: 9 rows
Threshold Bit Score: 658.322
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4BEB_A         38 RELIQDLRNQGYEFISVKSQSAMLANVRE--------------QLQNLNGVVFND--SEwRRFTEQY-LDNPS--D--GI 96   Escherichia coli
Q60295         30 DYVVENAAIQRLKNLGYSYKHGSELTPEYneresy--rdailkNRFIKAIKNINPw-LTeELALKVY-KTVTN--IdnPD 103  Methanocaldoc...
O05052          4 ENDIEQLTLQRLQSLGWEYRYGKDLPVHEgkfargdlsgvvfvEQLREAVRKLNPq-LPeSAVDSVV-KSATK--SdiGD 79   Haemophilus i...
P10486         38 RELIQDLRNQGYEFISVKSQSAMLANVRe--------------QLQNLNGVVFND--SEwRRFTEQY-LDNPS--D--GI 96   Escherichia coli
WP_010876573    5 EEALEDYFMKELRGMGWNDIPAAELGRDDpenp-------lieSELIDSIRRINQy-IEdDDIQQVI-QELRG--K--AA 71   Methanothermo...
Q58611          8 EIYVHNDIEENLNKLGWKELEGYEGEAFSnyi---------ikPILEEQLKIINDh-IG-EYKDEFI-EKAIN--K--LI 71   Methanocaldoc...
WP_010879204    5 KEQSEDYLSEILKSFGWEERKLSPDILDl--------------TEFKAALKRLND--VDdEDIKEVL-NYLET--R--SF 63   Archaeoglobus...
WP_010875622    5 EKEVQKQVIETFKSMGYAYLGDLTKSDNEni-----------nKESLKAWLIKNQk-IEpERWQRIE-HKIHNalK--ND 69   Helicobacter ...
WP_001105662   31 EAELERAFIKLLEKQGYEFKK---IHKEEel-----------kDNLKEQLEKLNDhcFTpKEWDTLYsQFIAN--K--NE 92   Helicobacter ...
4BEB_A         97 LDK--TRKIHIDYICDFIFDDERlENIY----LIDKKNLMRNKVQIIQQFEQAGS-----HAN---RYDVTILVNGLPLV 162  Escherichia coli
Q60295        104 FNM--RGKIFYEMLINGVKLEFKeNGEKk--tRFVKLIDFENINKNEFLVANQFEveyyyENGrfrRPDLVVFINGIPIA 179  Methanocaldoc...
O05052         80 LVV--RNQTFYKLLRDGVRVEYTqNGEQk--iEMVRLVDFEHWGNNRFVAVNQLEir-srKGGk-rIPDIIGFVNGLPLV 153  Haemophilus i...
P10486         97 LDK--TRKIHIDYICDFIFDDERlENIY----LIDKKNLMRNKVQIIQQFEQAGs-----HAN---RYDVTILVNGLPLV 162  Escherichia coli
WP_010876573   72 SIE--GCKSILEYLKNGVYIKSAtTGEP----RKVKILDHDTPSHNSFTASRQVVfrrgdQTI---RTDIMLFINGIPLV 142  Methanothermo...
Q58611         72 NEP--KPEEILDYIKNGILITLD-KGRKgqvsNRVKLIDYKNIEKNIFNYAHELKfk-gnDNI---IPDFTLFINGIPII 144  Methanocaldoc...
WP_010879204   64 DVE--GSMQILDAIKKGVTIKDS-EGILk----TIKLIDYANPEANSLVFSRQVSf----ADI---IPDITLFVNGIPLA 129  Archaeoglobus...
WP_010875622   70 LYE--ANQTFYELLIYGVKTKISqKNENt---QTTWLIDWKDISENEFSVAEEVSvk--gPNAk--RPDVVLYVNGIALG 140  Helicobacter ...
WP_001105662   93 DYKakTKKIQEDPIFNLTLENGKtKNIKi----IDKKNIHRNALQVIHQYSNKGGk----YAN---RYDVSVLVNGLPLV 161  Helicobacter ...
4BEB_A        163 QIELKK---RGVAIREAFNQIHRYSKE--SfnseN--SLFKYLQLFVISNGTDtryfa-------nttkRDENSFDFTMN 228  Escherichia coli
Q60295        180 IFEFKSp-kSNQTAKDAFNDHKTKMKD--I----P--QLYQYAQILVVSDGLEtk------------ygSPTSDWDRFFV 238  Methanocaldoc...
O05052        154 VFELKNplrESADLLQAFNQFETYKDE--I----A--ELFVYNQALIISDGIVar------------lgSLSADFQRFTP 213  Haemophilus i...
P10486        163 QIELKK---RGVAIREAFNQIHRYSKEsfN----SenSLFKYLQLFVISNGTDtryfa-------nttkRDKNSFDFTMN 228  Escherichia coli
WP_010876573  143 NIELKNpvgMSETWADAYRQIKDYEKT--V----P--ELYKYVQMGVAAEDFAryf-----------piVPWLDEVPTFE 203  Methanothermo...
Q58611        145 IIEAKRefsEKETYEEAINQINRYERE--A----P--KLFNYVQFAIVYGDEKlyipt-------ypneEKEDRFKKPYK 209  Methanocaldoc...
WP_010879204  130 IIECKK---MAKSWKEGYAQIKRYEQS--A----P--ELFKYVQIGFSf--------------------ADRLVYFPIVR 178  Archaeoglobus...
WP_010875622  141 VLELKK---SSVSVESAIRQNLDNQKKefI----R--DFFKTIQLVMAGNESQglr-----------ygVIETEEKYYLS 200  Helicobacter ...
WP_001105662  162 HVELKK---RGMAIREAFNQIKRYKRD--SfsaeD--GLFEFVQIFVISNGTSskyysnttriaqleknHKADTFEFTNY 234  Helicobacter ...
4BEB_A        229 WAKSDntli------------------kdlKDFTA-T--CFQKHTLLNVLVNYSVFDSsQt-LLVMRPYQIAATERILWK 286  Escherichia coli
Q60295        239 WEGVEsdddvevievdnygntmykykgnpyTSLDIlLmgLFKKEHLIEFLEDFIIHDK-K--KIIATYYQFYTVKKAVDR 315  Methanocaldoc...
O05052        214 WKVVDeknksa--------------rlyfdDELQSlLngLMQPEDLLDYIRYFVLFER-DsvGKTIKKIAAYHQYYGVNE 278  Haemophilus i...
P10486        229 WAKSDntli------------------kdlKDFTAt---CFQKHTLLNVLVNYSVFDS-SqtLLVMRPYQIAATERILWK 286  Escherichia coli
WP_010876573  204 WRETDgklpqksrk-------qghehhtglPAADI-Lp-LLRPERVLDFIRNYIYIRT-Ef-GSTTKVIARHMQYHAAER 272  Methanothermo...
Q58611        210 WKNEK-------------------------KEEDIwD--LLKRERVLDTIKNFIFFSK-DraGRKTKIIPRYMQYWAVKK 261  Methanocaldoc...
WP_010879204  179 WEESVpvy-------------------ewkPQFDI-----LKPEIFLDLIRYFTIYRE-Qd-GEITKVLPRYMQYRAVNS 232  Archaeoglobus...
WP_010875622  201 WKEEGvlk--------------------nlFETIE-C--FLKKERFLEFIHDFLIFDK-G-----KKKCARFHQYFAIKK 251  Helicobacter ...
WP_001105662  235 WADSKnhni------------------edlMDFAK-S--FFAKRSLLNVLTRYCVFTS-EevLLVMRPYQIVAAERILEK 292  Helicobacter ...
4BEB_A        287 IKSSFTAKNWSKPES-GGYIWHTTGSGKTLTSFKAARLAT--ELDFIDKVFFVVDRKDLDYQTMKEYQRFSp----DSVN 359  Escherichia coli
Q60295        316 TIKSVLYGETPEDRR-IGIVWHAQGTGKSITMLFYAKKALkqKELNYPLLVFLTDRLELDEQLYNVFSSVF-----SEAE 389  Methanocaldoc...
O05052        279 AVDSTIWATSEKGDRrIGVMWHTQGSGKSISMLFYAGKLLaqPELKNPTIVVVTDRNDLDGQLFQTFSSGKdl-ikQTPQ 357  Haemophilus i...
P10486        287 IKSSFTAKNWSKPES-GGYIWHTTGSGKTLTSFKAARLAT--ELDFIDKVFFVVDRKDLDYQTMKEYQRFSp----DSVN 359  Escherichia coli
WP_010876573  273 IVERVLRNIRGEDKRnRGLIWHWQGSGKTLTMIFAASKLYrmKELENPTVFFIVDRRELEEQLYAELAALEi----HQPE 348  Methanothermo...
Q58611        262 AYERITNYLNNKDYKnRGLVWHWQGSGKTFEILYLAELFYneFKNKDPIVFIMVDRRELETQFNDDIIALQnanfkDCFK 341  Methanocaldoc...
WP_010879204  233 IVERAVGWAKGFEERnKGLIWHWQGTGKTLTMIFSALKIR--DLIGNPSIFFVVDRVELQKQLSDELKNLKi----S-YE 305  Archaeoglobus...
WP_010875622  252 TQEFIQR------KE-GGIIWHTQGSGKSLTMVWLTRWLR--RNIKQARVLIVIDRRELDAQIKGVFQGIG-----EDLY 317  Helicobacter ...
WP_001105662  293 IKAAQNSKTYGKNQS-GGYIWHTTGSGKTLTSFKSATLAK--ELESISKVLFVVDRKDLDYQTMKEYDKFQk----DCAN 365  Helicobacter ...
4BEB_A        360 GSENTAGLKRNLDKDD----------NKIIVTTIQKLN-----NL----MKAESDLP---VYNQQVVFIFDECHRSQFGE 417  Escherichia coli
Q60295        390 RAESIAELQELIKKTP----------GGIIFATIQKFGr----KS----KDEHYPFL---TDRNNIIIIADEAHRSHYGT 448  Methanocaldoc...
O05052        358 QVEDRDQLRQLLAQNEv---------GGVFFTTIQKFA------L----NEEESRFPi-lNERNNIIVISDEAHRSQYGF 417  Haemophilus i...
P10486        360 GSENTAGLKRNLDKDD----------NKIIVTTIQKLN-----NL----MKAESDLP---VYNQQVVFIFDECHRSQFGE 417  Escherichia coli
WP_010876573  349 RIESIAELKRTIASDDyr------gkRGLFITLIQKFTd----KLdditAELREHGGetiMDRKNVIVFIDEAHRSQYGL 418  Methanothermo...
Q58611        342 KINSVEELKGVLEDIKesennpniseKGVYLVMMHKFDk---nKL----KDFIESFGs--IDKKEILILRDEAHRTESGK 412  Methanocaldoc...
WP_010879204  306 LIESIDHLKEVLSHADg--------kRGFFITLIHKFReeelaKL----REQMEKQHwsiAKRRDVVCLIDEGHRTQYGE 373  Archaeoglobus...
WP_010875622  318 RADSKKDLLSALFENK----------EFLVGSLVHKFDd----ND----LEDLKKQP---V-LKEWVVLVDECHRTQSAK 375  Helicobacter ...
WP_001105662  366 SNTSTKILKEQLEDSN----------AKIIITTIQKLD-----KF----VKSHKGHA---IFNEEVVMIFDECHRSQLGS 423  Helicobacter ...
4BEB_A        418 ------------AQKNLKKKFKRYYQFGFTGTPIFPENALGS---ETTAsv--fgRELHSYVITDAIRDEkvLKFKVDYN 480  Escherichia coli
Q60295        449 ------------LAQNLRKAIPNASFLAFTATPIDYKDRSTF---LVFG------DYISAYPIDKAKRHG--VVVPIYYE 505  Methanocaldoc...
O05052        418 tqklhngkfqtgYARHLRDALPNASFIGFTGTPISLEDKDTQ---DVFG------RYVSIYDLQDAVEDG--ATVPIVYD 486  Haemophilus i...
P10486        418 ------------AQKNLKKKFKRYYQFGFTGTPIFPENALGS---ETTAsv--fgRELHSYVITDAIRDEkvLKFKVDYN 480  Escherichia coli
WP_010876573  419 ------------LAAQMKDMLRSAFFFGFTGTPISKRERDTY---DRFAypp-eeKYIHQYFITDSIRDG--FTVKITYQ 480  Methanothermo...
Q58611        413 ------------FATLRNKILKNAIAIGFTGTPVHKKDMSTF---KEYAypqegeFYLDRFFIEESIKEG--FTLPLIWR 475  Methanocaldoc...
WP_010879204  374 ------------LAASMRSILKNASFFAFTGTPIAKKGRDTY---LAFGyp--dePYLDRYFILDSIDDG--YTVKIAFQ 434  Archaeoglobus...
WP_010875622  376 ------------LHKAMKSLLPNAIFIAFSGTPLLKQDKKTS---QEvf-----gNYIHCYKFNEAVSDR--VVLDLNYE 433  Helicobacter ...
WP_001105662  424 ------------MHQAITKAFKKYHLFGFTGTPIFAQNCDKNnplGTTEqk--fgKCLHQYTIIDAIRDKnvLPFRVEYH 489  Helicobacter ...
4BEB_A        481 DVRPQF-KSletetDE-----KKLSAAENQQAFLHPMriQEITQYILNNFRQKTHrtfpgSKGFNAMLAVSSVDAAKAYY 554  Escherichia coli
Q60295        506 ARLVEL-HL-----TN-----EFIDLEFDEISERVAN--DPETKESIKEVFAKLE-----KIMLTEDYLSKVSKDIIEHF 567  Methanocaldoc...
O05052        487 DARQIR-LN------K-----KDHDALFAEIDALLEE--EPSTSLRLREKLLGSQ-----------ERLIELAADFVQHF 541  Haemophilus i...
P10486        481 DVRPQF-KS-----LEtetdeKKLSAAENQQAFLHPMriQEITQYILNNFRQKTHrtfpgSKGFNAMLAVSSVDAAKAYY 554  Escherichia coli
WP_010876573  481 PRLAGDvHL-----DR-----KHLEAFIGVEFEELPEsiRKDVEESVKRKLDTIK-----TILENPRRIELIAEDIAKHF 545  Methanothermo...
Q58611        476 VVKPED-IK-----DIs---eEEIKNIIEKLFVDEED--ADKIVVSKKEIAEKIKl---sDLLKSESSIKEASKYIAEHI 541  Methanocaldoc...
WP_010879204  435 SRLDEV-HL-----DR-----ENLEIFLSSKLEEIPEeyREKVEQDLKRRLNKVK-----VILEDKKRIERIARDIASHY 498  Archaeoglobus...
WP_010875622  434 ARSVDQ-YV-----SS-----PE---KLDEYFELKTQclNDIAKTELKKKWVNLQ-----KVFSTKDRLARIVQDIVLDM 494  Helicobacter ...
WP_001105662  490 NTIKAK-ED-----IKd----NKVRAVDEKSALLDNRriKEITKCILERFNQATK-----NKRFNSILACSSIEALKKYY 554  Helicobacter ...
4BEB_A        555 ATFKRLqeeaanksatYKPLRIATIFSF-AANEEQNAIGEISDEtf------dTSAMDSSAKEFLDa----aIREYNSHF 623  Escherichia coli
Q60295        568 NKRLQDf---------DGKAMVVTISRK-VAVELYKWITKQPNAp--------KIAVVMSGNKSKD------PEDFHPHI 623  Methanocaldoc...
O05052        542 AKRNEv---------vDSKAMMVVSSRQ-ICVDLYNQIIALHPEwhsdninegAIKIVMTGSASDT-------PEMQKHI 604  Haemophilus i...
P10486        555 ATFKRLqeeaanksatYKPLRIATIFSF-AANEEQNAIGEISDEtf------dTSAMDSSAKEFLDa----aIREYNSHF 623  Escherichia coli
WP_010876573  546 KENIDGr----------FKAMVVAPSRR-ACVLYKRELDRHLPPe--------YSEIVMTYTPRDEe----iIRAYDEEL 602  Methanothermo...
Q58611        542 LEDTENf---------KFKAMVVAQDRK-SCILFKKYLDEYLKEkikn-ynenWTQVVITYIHNDDv----eIENYKKEI 606  Methanocaldoc...
WP_010879204  499 IQFVK-----------PFKAMVVAVSRN-ACLYYKQALDKFLNEn--------ETEIVMTFQQNDSk----eLLDYLEKL 554  Archaeoglobus...
WP_010875622  495 AKLPRLrs-------eKGNAMLVAESVYnACQYFELFLETELKDkvavitsyePNIADLKDCGSDEseesykYRAYCKML 567  Helicobacter ...
WP_001105662  555 QAFKEe----------KHDLKIATIFSY-SANEELDTLEDENNEs--------ACRLDKSSRDFLEg----aIADYNGMF 611  Helicobacter ...
4BEB_A        624 KTNFSTdSngfq-------nyyRDLAQRVK-N-QDIDLLIVVGMFLTGFDAPTLNTLFVDKNLRYHGLMQAFSRTNRi-- 692  Escherichia coli
Q60295        624 RTKKEL-E--------------NLAKEFKDpE-SDLKMVIVVDMWLTGFDVPCLHTMYFLKPMKNHSLAQAIARVNR--- 684  Methanocaldoc...
O05052        605 YSKQEK-Q--------------TLERRFKDpN-DPLKVVIVRDMWLTGFDAPCCNTMYLDKPMKGHNLMQAIARVNRv-- 666  Haemophilus i...
P10486        624 KTNFST-Dsngf------qnyyRDLAQRVK-N-QDIDLLIVVGMFLTGFDAPTLNTLFVDKNLRYHGLMQAFSRTNRi-- 692  Escherichia coli
WP_010876573  603 MDKYHG-Rnhhe-------iknLVLERFRD-PdRNPRILIVTDMLLTGFDAPILQTMYLDKPLKEHRLLQAVARTNRp-- 671  Methanothermo...
Q58611        607 EKKYGK-Nvde--------lnkKWTEDFIN-K-ENPKILIVNKKLLTGFDAPILKTIYIHQFLKDYLLLQASARANR--- 672  Methanocaldoc...
WP_010879204  555 RKKYGK-Selke-------iheEIITRFKK-Y-ENPKILIVTDMLLTGFDAPILQTLYLDKPLKEHRLLQAIARTNRpfv 624  Archaeoglobus...
WP_010875622  568 QNFFDE-KdekkalnkikefeeKVKDRFIN-EpNRMKLLIVVDKLLTGFDAPSLTYLYIDKKMQDHGLFQAVCRVNRl-- 643  Helicobacter ...
WP_001105662  612 GVSFDT-Sdqkf------qsyyKDLSQKMK-D-RKIDLLMVVNMFLTGFDATRLNTLWVDKNLKYHGLIQAFSRANRi-- 680  Helicobacter ...
4BEB_A        693 -YDA-T-KTFGNIVTFRDLE----RSTIDAITLFGDKNTK 725  Escherichia coli
Q60295        685 -VFK-D-KPGGLIVDYIGIA----DDLSKSLSKYSSEARK 717  Methanocaldococcus jannaschii DSM 2661
O05052        667 fANKsR-ENGGLIVDYVGLA----KELRAATQQYTNSTGK 701  Haemophilus influenzae Rd KW20
P10486        693 yDA--T-KTFGNIVTFRDLE----RSTIDAITLFGDKNTK 725  Escherichia coli
WP_010876573  672 -YRD-V-KEAGLIIDYIGVMg---AELRRAFELYSKEEYE 705  Methanothermobacter
Q58611        673 -PAK-N-KKYGLIVDLTGILienyKKAIENYNLYRDEAIN 709  Methanocaldococcus jannaschii DSM 2661
WP_010879204  625 kDGE-NlKGAGLVVDYVGVF----KFLKKAFEMYEEEDIR 659  Archaeoglobus fulgidus
WP_010875622  644 -DGE-D-KDFGCIIDYSDLF----DSLQEVHSDYTNKAFE 676  Helicobacter pylori
WP_001105662  681 -LDS-V-KTHGNIVCFRDLE----QDLNDALMLFGNKDAQ 713  Helicobacter pylori
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