1V2Y


Conserved Protein Domain Family
Ubl_SNRNP25

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cd17058: Ubl_SNRNP25 
ubiquitin-like (Ubl) domain found in small nuclear ribonucleoprotein U11/U12 subunit 25 (SNRNP25) and similar proteins
SNRNP25, also termed U11/U12 small nuclear ribonucleoprotein 25 kDa protein, U11/U12 snRNP 25 kDa protein (U11/U12-25K), or minus-99 protein, is a component of the U11/U12 snRNPs that are part of the U12-type spliceosome. It contains a conserved ubiquitin-like (Ubl) domain with a beta-grasp Ubl fold, a common structure involved in protein-protein interactions.
Statistics
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PSSM-Id: 340578
Aligned: 56 rows
Threshold Bit Score: 86.4181
Created: 26-Oct-2016
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
key conserved
Conserved site include 1 residue -Click on image for an interactive view with Cn3D
Feature 1: key conserved lysine K27, 1 residue position
Conserved feature residue pattern:[KR]Click to see conserved feature residue pattern help
Evidence:
  • Comment:K27/R (Ub numbering) is a lysine conserved in the Ubl_ubiquitin_like family; it is one of 7 lysines involved in chain linkage in ubiquitin (K6, K11, K27, K29, K33, K48, or K63, Ub numbering), the other 6 lysines are not conserved in this family; may have other functions, for example in NEDD8 K27 is involved in the mechanism of protein neddylation

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                   #                                                    
1V2Y_A         7 GMTVRVCKmdGEVMPVVVVqnaTVLDLKKAIQRYVQLKQEREggvq-hisWSYVWRTYHLTSAGEKLTedrkklrdygIR 85  house mouse
OEL23060      56 RLRLTVHKldGSFFDVEIArsaAVWELKAAIEELFFALFDDTdkt---isWQHVWSHFCLCFKDERLTddkatlrafgIR 132 Dichanthelium o...
XP_010943279  48 LIKLTIIKldATSFDVQIArtaAVWELKMAIENLFKNSADDGgcy---isWSHVWRHFCLSYDGFKLTddhttlrtfgIK 124 African oil palm
XP_008443964  39 LLRLSVLKldGSSFEVQVErtaTVAAVRDAVESVFCEMSMNKedf--nisWPHVWGHFCLCYKHFKLMddksriqhfgIR 116 muskmelon
XP_015894210   4 FAGLPISKpeVLYTEVNVSrtaTVAELKEAVKDVFRQLPNETesn---isWSHVWSHFCLSFKGQKLIddktyirflgIR 80  Ziziphus jujuba
XP_001769021  51 SMKLSILKldGSHFDVVVLtnsRVRDLKQAVVKYVDHLEQSElghk-risWQHVWGHFCLCHGTEKLVdddarlagfgIR 129 Physcomitrella ...
ABK21326      28 SIRLCIFRmdNTSFDVSVPgtaSVLELKKAIEDKFGNSQMEEgk----isWCHVWGNFCLTYEDRELVndgsllssfgIK 103 Sitka spruce
OAE27918     194 AMKLSILKmdNTSFDVAVLntaSVRELKAELEKKVDSMEQGQlghr-hisWKHVWGNFCLTYNNEKLLnddallrefgIK 272 Marchantia poly...
NP_187443     51 AMRLSVVKldGSSLDVAVMnsaTLKDLKLLIKKKVNEMEQANmghr-hisWKHVWSNFCLSCNNEKLLddnavlqdvgIR 129 thale cress
XP_018837362  68 LISLTTQK--KKSLYYHISnpyDILAAKKALNQSSPPGLEDEklvqckisWSHLWGHFSLCYNGQKLVtetdftrnygIK 145 English walnut
Feature 1                  
1V2Y_A        86 NRDEVSFIKK 95  house mouse
OEL23060     133 DGDELHFAQH 142 Dichanthelium oligosanthes
XP_010943279 125 DGDELHFMRH 134 African oil palm
XP_008443964 117 DGDQLHFVEL 126 muskmelon
XP_015894210  81 DDDQLYFVQR 90  Ziziphus jujuba
XP_001769021 130 NNDQLRFEHH 139 Physcomitrella patens
ABK21326     104 DSDELFFVRH 113 Sitka spruce
OAE27918     273 NNDQACYAYC 282 Marchantia polymorpha subsp. polymorpha
NP_187443    130 NNSQVTFMPY 139 thale cress
XP_018837362 146 DGDQLKIVRH 155 English walnut

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