5LKM


Conserved Protein Domain Family
Sms

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COG1066: Sms 
DNA repair protein RadA/Sms, contains AAA+ ATPase domain [Replication, recombination and repair]
Statistics
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PSSM-Id: 440685
Aligned: 734 rows
Threshold Bit Score: 524.613
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5LKM_A         1 Ma-K-KKATFVCQNCGYNSPKYLGRCPNCGSWSSFV-EEVEVAEVkNar-vS----LTGEKTKPMKLAEVTSINVNRTKT 72 
NP_294829     57 Vp-K-VKTNYICNSCGYQSAKPLGRCPNCQAWNSFEeEVPTASTSgKsgrgGlggyGGVKGGKLTPLSTVGRREEPRTPS 134
YP_003317213   1 MapK-TSSRYRCSNCDFVSLTLVGRCPSCGSWGTMErEEILPVSS------------APSGGLPKLVTLEEAPPERRILS 67 
WP_013048086   1 MakK-NMVRYVCSNCGNISLTWNGRCSACDMWGTYEkEEIDESGCe-----------KPRSSDLMAVNIIDVRPPQRFTS 68 
WP_013178692   1 Ma-K-VGTTYVCSECGTHSPVKMGRCPRCGTWGSMAaQAPAPARApSrgapG----AALHQAVVERLADVSSAEAQRLPS 74 
WP_014162853   1 MgkK-ESKKYECIECGYTGTTWSGRCPKCGAWGTIEeVLALPSE------------DSQMKSFILPLPLHEIKSPSRLSS 67 
WP_014806477   1 Ms-KaKIKRYRCAECGAISLTWSGRCQTCGGWGTLFeEKEEDLPGr------------PRESYAKKITLSEVGEIRRFPT 67 
WP_011526699   1 Ma-K-PREVYICIECGAQFPQWHGQCLTCKTWNTLKiHNAPSTTAqK----------IYKKLKPIPIGRVETSTYQPFST 68 
WP_066745998   1 MakK-EINSYKCSECGYRSTTMMGRCPKCGSWGTMEdDTPIQTVKgG---------LVAAAKAAVPISGLEVEEQERILS 70 
WP_122030515   1 Ma-------YRCRECGYQSPKWLGRCPQCGRWESFDeVGAPAGG-------------GGSGEPPRSLSEVPALSPERLAT 60 
5LKM_A        73 EMEEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVg-TVLYVSGEESAQQIKLRAERLGDI-DSEFYLYAET 150
NP_294829    135 GIPELDRVLGGGLVAGGVTLIGGEPGIGKSTLLLQVADKVASRggTVLYVAGEESLEQIRLRADRLGV--AADLQMTRDT 212
YP_003317213  68 GLPDLDLVLGGGWLPGGVVLLGGEPGVGKSTLLLQSCSAVAQGgtKVVYVSGEETPSQIASRAKRLQLTlGENFKVLVCD 147
WP_013048086  69 GIPELDRVLGGGWVSGGVVLLGGQPGIGKSTLLLQVCGAMAARgeRVLYISGEESASQVALRARRLLAL-HNNLDLFCDT 147
WP_013178692  75 GLSEVDRVLGGGWVAGSVTLLAGEPGVGKSTLLLQLAHEALRAarRTLYVAGEESLAQVKGRAERLGV--DARLELTRET 152
WP_014162853  68 QDEELDRVLGGGWVPGSSVLLAGEPGIGKSTILLQTCLRMAQKgkNVVYLSGEESPSQVALRAKRLGIA-SQNLKIGSGY 146
WP_014806477  68 GIDELDRVLGGGWVEGGVVLLGGEPGVGKSTLLLQSAISMAEGgkKVLYVSGEESPSQVAMRAKRLNAR-DGNLFLLCTD 146
WP_011526699  69 GIKVLDHILGKGLVPSSALLIGGEPGIGKSTLLLQLAGATATLgkIVLYVSGEESLPQIKARAERLTVL-HDNLLSMATS 147
WP_066745998  71 GIDELDRVLGGGWVQGGVTLLGGEPGVGKSTLLLQVCAEMAKRgsRVLYISGEESSGQLALRGRRLGLM-TQGLDLLCES 149
WP_122030515  61 GLPEVDRVL-GGLLPGTVVLFGGEPGVGKSTLLLQLAARLAARhgKVLYVSGEEAVAQVKLRAERLGIS-EPSLYLQSEQ 138
5LKM_A       151 NMQSVRAEVER-IQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHM 229
NP_294829    213 RAEHIAALLEE-HKPALCIVDSIQTVTVEG-EGAPGGVAQVRDGTAMLTRAAKETGTATVLVGHVTKDGTVAGPKVMEHI 290
YP_003317213 148 DVMKAIGAAEA-HGAELLVVDSVQALRHPDASGWPGSPNQVRAVAENVIGFAKRTGASAVMIGHITKQGAIAGPKALEHL 226
WP_013048086 148 DLDGALSHVEG---HGFVVLDSVQAMRSSLEDGWPGTPSQVRAVAQQCIDSAKKTGIPFVVVGHITKEGRIAGPMLLEHM 224
WP_013178692 153 DARVLAEHLRA-HAPAFVIVDSIQTLLAD-DGGTPGSVTQVRDATALLTGAAKEAGSALVLIGHVTKQGQVAGPKVVEHM 230
WP_014162853 147 NIDDLLAGSSG-SD--LVVVDSVQSFTSGDLPGLPGTPSQVRAVAQKAISSAKQNGCTVVMIGHINKEGLIAGPKLLEHM 223
WP_014806477 147 DIDEALQAAGD---VEFLFLDSVQTMRDRDEGGWPGSPLQVRVVAQKCIELAKALGLPTVLVSHITKSGQIAGPKLLEHM 223
WP_011526699 148 QVEDILPLLNTsEAPDLLLIDSVQTLTSSNAEGLPGNVSQVRAVATELVEACKQGKTTVIFIGHVTKDGTLAGPRLLEHL 227
WP_066745998 150 DLPSSLAAAEN-HGYKFMVIDSVQAFRADSESGWAGSPNQVKGVAAMAVETAKRCGIPTVLVGHITKQGQIAGPKLLEHL 228
WP_122030515 139 ELLAIVRAVEE-IEPTVLVVDSLQTVLARPDGGEIGSLTQVREAAAHLARLAKGLGMVTFLVSHITKGGEFAGPKTVEHL 217
5LKM_A       230 VDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQA 309
NP_294829    291 VDTTVFLE--TVGAFRLLRSVKNRFGQAGELGVFEMRGEGLIAVDNPSAAFLAERPLDVPGSVVAATVDGQRPMLLEVQA 368
YP_003317213 227 VDVVLVFFGERTSRNRLLRAEKNRFGGTEELGIFQMCERGLVPVSDPSALFWGE-DEGVAGVAMGVPMEGSRPILSEIQA 305
WP_013048086 225 VDAVLLFSGEDTSAYRMIRGTKNRYGNTDELGIFEMTEKGLIAVEDPSGLYWNKADVSVPGVAVTVVMEGSIPLMAEIQA 304
WP_013178692 231 VDATLALE--SASGLRVLRAMKNRFGPAGEMGVFEMKGDGMAEVANPSEAFLAERPRGVPGSAIVAALEGQRPLLLEVQA 308
WP_014162853 224 VDTVLLFSGDRLSPYRVLRAVKNRFGATDEMGVYEMLDKGLFAVNDPTRLYWRNKDEKVPGVTVTPVVEGSRAFLVEIQA 303
WP_014806477 224 VDVVLFFGGDKTSRFRVLRSEKNRFAGCDEIGIFEMTERGLAAVFDPSKVFWNEMALSEPGVAMGVMLEGTRPLVSEFQA 303
WP_011526699 228 VDTVISLEGDRRHIFRLLRVIKNRFGPNQELLIFQMAQHGLEPVADPSTYFLGARDPSLSGTAVVMTIDSQRPLAVEVQA 307
WP_066745998 229 VDVVLLFSGEQNSPNRLLRAEKNRYGSTEELGIFEMSERGLTAVNDPSRLYWNGTDLGSSGVSISMVLEGSRALAAEIQA 308
WP_122030515 218 VDVALQLEGVREGDLRLLRCLKNRFGSTAEVAVLQMDPTGLSEVANPSLFFVSQDRAPKPGAAIVPVLEGSRTLLVEIQA 297
5LKM_A       310 LVTPT-MFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQEC 388
NP_294829    369 LASKT-PYPNARRVVVGLDPRRVDVVLAVLERRLDLTLGGLDVYVNLAGGLKVPDPGLDLAVALAVYSAVVGRALPQNVA 447
YP_003317213 306 LTCQS-PYPYPKRASKGIELNRLQLLMAVMDRRCGMSLRTSDVYLNVAGGLAIQDPAVDLAVCAAIASSVEDVPLDMKAC 384
WP_013048086 305 LASAT-TFPYPKRTSRGIDVNKVHLLTAVLEKRAKTTCNMFDIYLNVAGGLVVKDPGADLALAVALASSVHECSLPSDCC 383
WP_013178692 309 LAAKS-PYAAPRRTVQGLDPRRVDVVLAVLERRLELPLAGLDVYVNVAGGLRLTDPGTDLAVALAVFSAVTNRPVPEKTA 387
WP_014162853 304 LVATS-PFPYPKRTAIGVDPSRLQLLLAVLERRFGVSTISQDVYVNVVGGVAVRGPQADLALCAALASAHHSRPVDPSYC 382
WP_014806477 304 LACAT-PFMYPKRTARGVDLNKLHLLLAVLERRANLSARNFDVYVNIVGGISTKDPGVDLAICMAIASTITDKPIPRDMC 382
WP_011526699 308 LVTKS-YLAIPRRTGLGFDVNRLHLILAVLEKRLRLNFSNVDIYVKIGGGIKLQEPGIDLALVAAILSSFYDVPLPERSV 386
WP_066745998 309 LGCVT-PFPYPKRTARGIDVSRLQLLLAVLERRCGIPSRTSDIYLNVAGGLQLKDPAADLGICASLASAVMDIELPSDVC 387
WP_122030515 298 LIAPGsGFGPPQRRTAGLDVNRTSVLLAVIEKYLGVHVRAMDVYLAVAGGLEVREPAADLGVCAAILGSLRGRAIPPDTV 377
5LKM_A       389 FVGELGLTGEIRRVNRIEQRINEAAKLGFTKIYVPKNSLTGit-lPKEiqVIGVTTIQEVLKKVF 452
NP_294829    448 VFGEVGLAGEVRSTQMALRRAEEAGRAGYKRLVVPPGLDGQa----------GVKSVEEAVKAVW 502
YP_003317213 385 FIGEVGLAGEVRPVPRMAQRVREAERFGFRRFVVSAKDLKAdgldcSRddIIPVRNVREMVKLVL 449
WP_013048086 384 FLGEVGLAGEIRPVGRIGTRLREAARLGFRKAIVSHQQKGDf---PKEirICRAVNIRDALQEVM 445
WP_013178692 388 VVGEVGLAGELRSVAQFARRVAEARRADFTRLIGPRTLEAt--------dGIPATTLAEALRAAL 444
WP_014162853 383 LIGEVGLAGEVRPLPRITSRIKEAKRLGYKRFIISKGQELEk---IEGvsLYKVENIKEALEEVG 444
WP_014806477 383 FLGEVGLSGEVRPVARAALRIREAERMGFKKIVMSRYEKGEk---SCNikQIGVESLKEAVRMML 444
WP_011526699 387 FWGEVDLNGQIRPVGSHSIRLSQASKLGYNPIFYPKHEQS------------GLATVMELQQSLL 439
WP_066745998 388 FIGEVGLAGEVRPAGRTLMRVKEAARLGFTRAVISRRTPKE----SYPieVLKISSLREIVDLFL 448
WP_122030515 378 VLGEVGLAGEIRPVRKGPERLQEVAKLGFARAVAPPGSLPK----RLPltVVQARTLQEAMEALE 438
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