2HVZ


Conserved Protein Domain Family
RRM_SRSF7

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cd12646: RRM_SRSF7 
Click on image for an interactive view with Cn3D
RNA recognition motif (RRM) found in vertebrate serine/arginine-rich splicing factor 7 (SRSF7)
This subgroup corresponds to the RRM of SRSF7, also termed splicing factor 9G8, is a splicing regulatory serine/arginine (SR) protein that plays a crucial role in both constitutive splicing and alternative splicing of many pre-mRNAs. Its localization and functions are tightly regulated by phosphorylation. SRSF7 is predominantly present in the nuclear and can shuttle between nucleus and cytoplasm. It cooperates with the export protein, Tap/NXF1, helps mRNA export to the cytoplasm, and enhances the expression of unspliced mRNA. SRSF7 inhibits tau E10 inclusion through directly interacting with the proximal downstream intron of E10, a clustering region for frontotemporal dementia with Parkinsonism (FTDP) mutations. SRSF7 contains a single N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), followed by a CCHC-type zinc knuckle motif in its median region, and a C-terminal RS domain rich in serine-arginine dipeptides. The RRM domain is involved in RNA binding, and the RS domain has been implicated in protein shuttling and protein-protein interactions.
Statistics
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PSSM-Id: 410050
Aligned: 7 rows
Threshold Bit Score: 144.718
Created: 16-Sep-2011
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
putative RNA
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:putative RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:Based on sequence similarity with Human Srp20 (2I2Y).

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                     # ###   # #                              # #    
2HVZ_A         2 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDpRDAEDAVRGLDGKvICGSRVRVELSTGMPRR 78  human
NP_001025438  12 KVYVGNLGTGAGKGELERAFGYYGPLRSVWIARNPAGFAFVEFEDpRDAEDSVRGLDGKvICGSRVRVELSTGMPRR 88  zebrafish
NP_001026539  10 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDpRDAEDAVLGLDGKiICGSRVRVEVSTGMPRR 86  chicken
NP_001086618  12 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDtRDAEDAVRGLDGKvICGSRVRVELSTGMPRR 88  African clawed frog
XP_006007835  13 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDpRDAEDAVRGLDGKvICGSRVRVELSTGMPRR 89  coelacanth
XP_007892560  66 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEEpRDAEDAVRGLDGKvICGSRVRAELSTGMPRR 142 elephant shark
XP_002734102  13 KVYVGDLGSGAAKHELERAFSHYGPLRNVWVARNPPGFAFVEFEDpRDASDSVRGLDGRvICGRRVRVEQSSGKSRR 89  Saccoglossus kowal...

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