6DGD


Conserved Protein Domain Family
PriA

?
COG1198: PriA 
Primosomal protein N' (replication factor Y) - superfamily II helicase [Replication, recombination and repair]
Statistics
?
PSSM-Id: 440811
Aligned: 554 rows
Threshold Bit Score: 522.757
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
?
Program:
Drawing:
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
6DGD_A        21 MSVAHVALPVP-LPRTFDYLLPEGmaVK--AGCRVRVPFGKQERIGIVAAVSERSE-LPLDELKPVAEALDdEpVFSTTV 96 
WP_081430056   9 IMIYEIAISKIpLRKSFLYQYSGe--LE--SGERVLVSFNSRDCVGYVLCQSELSDnIDLREIKEIKERIDgLsFVNPRD 84 
YP_169272      1 -MIVKVALPVP-PSYVLDYSVDCQn-VE--LFERVLVQVGKRQLIGFIVAKDVKIG-YEAEKLKTIIRILDk--PISLAI 72 
WP_039123541   1 -MIVKVALAVP-PTYLLDYRVDEQn-VN--LFDRVLVQVGKRQLIGFIVVKNVTVN-YEITKIKPIIKLLDk--PISLQM 72 
WP_066283332   1 MNIVKVALPIP-VMHAFNYQLPSNf-LSpiKGRRVLVPLGKRMILGIVLSDNIHVK-CSYRQYKIIKEILDyEsLFSDNL 77 
WP_014730113   1 -MLIQVAISNSpLYDTYTYMTDSp--VE--PGERVEVNFSGRNTVGYVVSLEGKT---GRYRIKSINKRLDgRpFLSSKD 72 
WP_015868880   1 -----MAISGSpLLDTFTYHTDFp--LT--PGERVVVDFANRSVVAYVVEITDEL---PEFATKPVLQKLDeKpFLTSKD 68 
WP_045088321   1 MYYYDVVPLGQrLFKPYTYKYEQk--LE--VGQRVVIDLRGKFVQGLVYRESNTP---EILKIKDIEFPLDeKsYLNNSH 73 
WP_012209232   1 MYYYEVIPIGQmVFNGFTYKSDKk--LE--IGQRVIIDLRGKFLPGLVYKESETT---EFDKIKEIAFPLDnKsFLNEKH 73 
WP_014296247   2 YHYYEIAVFGTyTYNTYTYKSTNq--LT--PGQRVLVDFRNQQKIGIILSETSEK---PY-NVKEIELLLDeKpLISQKH 73 
6DGD_A        97 WRLLMWAAEYYHHPIGDVLFHALPVMLRQGKPASAt-------------------------------------------- 132
WP_081430056  85 VELIKWVARRFYSPIGQLFDMMIPAFVDDYAKTMVestseliplesmslsefiskygektl---kmylkkgyiklrrifa 161
YP_169272     73 QKLISWLSQYYCCDIYSAIRLALPNDFLKLQEVkp--------------------------------------------- 107
WP_039123541  73 QKIIQWVANYYCSDLYSAIRLALPNDYFKHEVItp--------------------------------------------- 107
WP_066283332  78 LSLLIWSSKYYHYPIGEVLFHALPSLLRQGKGTIFsp------------------------------------------- 114
WP_014730113  73 LELAEFVMKEYIAPPGKVFDLFFPPGKLLSVDDFVvplsdelgfsptkkdkfikqygee------kltellslrdvkimh 146
WP_015868880  69 VELALRISERFLCPVGKIFDLFFPPGKVMNVKSFVvpqsqelpikdiipltaarekfgavt---ienwkksrkirivhsy 145
WP_045088321  74 IKLLERVCNYFLAPMGEIAKLFFPPASSDVYKLKIvplnelapfekpifykdflslykdnstankklkellstnvvkldl 153
WP_012209232  74 IKLMEKVSSKFMAPIGEVARLFFPPLSSDIYKLRItpkssfspiqkpifykqflksfdnaskankqlreyldsnlieiel 153
WP_014296247  74 IELIKEASIKFLMPISEIAKIVFPPISSDRTRIKIipksplapiektifinefykkfktkkeankklkqllenhivslel 153
6DGD_A       133 --------pLWYWFAT--EQ-----GQVvdlnglkRSRKQQQALAAL--RQ--GkIWRHQV-GELE-FNEAALQALRGKG 191
WP_081430056 162 akqprprvgNLYLFLNknLE------EAil---taKNPDEYDVLNYL--FAneG-ATVNQVvESTG-VTVKKIRKMMDKG 228
YP_169272    108 -------qqDTYVYIDkv-----rlQQh------kLTAKQQDLISAI--ATqeL-IKLEEL--KQL-ASSYVINKLFANN 163
WP_039123541 108 -------sqEVSVYIDqi-----klQDh------kPTLKQQQLLANF--KEkeL-ISLEEL--KTL-GSVHVINGLFKKG 163
WP_066283332 115 ---------lQQWQVTs-YGkntsiNQLr------RSPKQQKALKLL--QEr--nLYHHQi-NEFE-LSKNTLKLLKKKN 172
WP_014730113 147 sferrtpkkRKIRRISlsLK-----TDLlk---qnLTPLWQTIVDYL--LSveS-AEVSELeKKLQlKSRSPIETLISKG 215
WP_015868880 146 eqkktrvqkKKFVRLRlsIK------DLek---ikLTDLQRKVVEHL--FSfdV-IEVRELiKNLDlKSISPIQTLEKKG 213
WP_045088321 154 hkrsirenkDYFVSLSmdLS------EIwn---fnLSKGARNVINYLs-INgeT-LESELYeKGIInRGTTVLKTLHKKG 222
WP_012209232 154 yrkeitkkiDKFVSLKmdLK------EMwk---fnVSKSAREVINYLs-INgeT-LESDLYsQGILkKGSTVLNTLWKKG 222
WP_014296247 154 yykrkiekkDRYISLNldLN------QLle---qkVSQAGMNIINFLqeNNgcV-IEKELYqNNIIkPGSTALKTLIKKG 223
6DGD_A       192 LAELaCEAPALT-DwrSa-Y-SVAGERL-----RLNTEQATAVGAIHSaaDRFSAWLLAGITGSGKTEVYLSVLENVLAQ 263
WP_081430056 229 LLRA-SDMpsi--------------------qsALIEKNRENQLIIDD--NEPEKKVISGGTVEERFNLILPLIKNAIES 285
YP_169272    164 ILNK-TYKLKQ-----Sen-vLNTDKSR-----VLNQQQQYVLEQILAn-TNFNVSLLYGITGSGKTEIYLQAIAEVLAK 230
WP_039123541 164 ILIK-KIQLKNL----Ftn-aSENDCPK-----KLAVEQQKAVETILNt-NAFKVFLLYGVTGSGKTEVYLQTISKYLEK 231
WP_066283332 173 LIQL-LYVQPQMeNwy--pNfYffIKKK-----ELNLEQKTVVRILNSk-lKFTTFVLVSKNSFSKIKVYLNVIGNVLKT 243
WP_014730113 216 ILT---EE--------EteE--DDSHWVipavtELNGKQKEVYKSIME--SGSKAFLLHGLTGTGKTEVYFKVMEYLLNK 280
WP_015868880 214 ILEV-FED--------EtyE---FSDWTiapidELTSEQRRVLNSIVY--DFKGVHLIYGLTGTGKTEVYFKAMEKVLTE 279
WP_045088321 223 IINI-TED--------FliN--SDEEKV-----DLTDEQKTAVDFIRT--HDDKPHLLYGVTGSGKTEVFFEVGESVLEK 284
WP_012209232 223 IIEL-SEG--------FpiY--EENTEI-----SLNDEQRQAVEAIKA--NSDKPHLLYGVTGSGKTEVFFEVARPILEN 284
WP_014296247 224 IISY-TDy----------kK--ETPFKV-----SLTEKQKEILEKILY--SNKNIELLYGVTGSGKTEIFFEAMESYFKN 283
6DGD_A       264 GRQALVMVPEIGLTPQTIARFRQRF-NAPVEVLHSGLNDSERLSAWLKAKNGEAAIVIGTRSSLFTPFKDLGVIVIDEEH 342
WP_081430056 286 GCSVLYLVPLSSQIPYIAGMVQKSL-DVRTYVYHGNLSKSQKALVWISAYKGETGVYIGTRNTVFLPIKKLGAIVVENDE 364
YP_169272    231 SQQVLILVPEINLTPQTIKRFENRFvDKNVVALHSKLSDKARLTNWLKIKQGKADIVIATRSGVLADFCNLGMIIVDEEH 310
WP_039123541 232 LKQVLVLIPEINLTPQTVKRFKQRFnNKKTVVLHSKLSEKARLTNWLNIKEGNADIIISTRSGVLADFKDLGVIIVDEEH 311
WP_066283332 244 GKQVLLLVPEIKLIYNFMDIFKKRF-NAPIDILHSKLNNNERLAVWLRAKKGYSAIVIGTRSAVLISFMNLGLIILDEEN 322
WP_014730113 281 GRQVLYLVPEVSLTPQLLARIRGAFpGRDVRQYHSYMAKGLRQQIWLDAVEGNVDILVGTRSSLWVPMKNTGLIVVDEEH 360
WP_015868880 280 GAQVLYLVPEVSLTPQLLARVKGTFpGREVRVYHSYLSKAKRQGIWLDAHEGNVDIIIGTRSSIWIPMRKLGLIIVDEEH 359
WP_045088321 285 GGKLLILVPEISLTSEIMSRLKKRFsKYKAAFYHSSLTSSERVDTWYKAVEGEIDIVIGTRSAVWIPIKDLKMIIIDEEH 364
WP_012209232 285 GGKVLLLVPEISLTSELMIRLKKRFaNYNAAFYHSGLTSSERVQTWYKAVNGELDLVIGTRSAIFIPMKDLKMIIIDEEH 364
WP_014296247 284 EKKVMILLPEISLTPQLISRINNRFpDKKIGVYHSGISPAEKIKTWYEAVNGEIDILVGARSAVWIPLKNLGLVIADEEH 363
6DGD_A       343 DSSYKQQE-GWRYHARDLAVWRAHSEQIPIILGSATPALETLHNVRQGKYRQLTLSKRAGNARPAQQHVLDLKGQPLQAG 421
WP_081430056 365 DESYYQFE-EPVFDCVEVAQKRAFLYDVPLILSSASGRLDDFSDLENSCILKLQTSSR-------NVILVDMKKQNSF-- 434
YP_169272    311 DGSFKQQTtTIRYNARDVAIFRARQLDIPIVLGSATPSLQSYYNCVSGKYRLLKLTQRALNSHKNQIELLDLKSAIVDNG 390
WP_039123541 312 DNSFKQQTsTIRYNARDLAIFRAKELNISIILGSATPSIESYYNALAGKYKLLQLKNRALNNYLNEIRLLDLKSSIVDNG 391
WP_066283332 323 DNAYKEQY-GWRYHARDFAVMRAKKEDISIILGTETPSLESLKNIDEGKYQRLDLTEQTKSNKKLSQYLLDLKCQPLKHG 401
WP_014730113 361 DTSFYQQS-VPYYDGVEAAMKKAELLNVPIILGSATPRVSHYHLTESGKLILLSLTERPVGS-FPIIELIDMKEEKNp-- 436
WP_015868880 360 DASFYQQS-SPHYDAVEVAVEKGKLHNIPIILGSATPRVTHYFRAIEGEYKLHKLKHRPVGK-LPSLELIDMRKSKGFy- 436
WP_045088321 365 DQSFYQIE-NVTYDAIEVALFRKELENIQLILSSATPRVVDIKKAKDDEMYLETISSRYFSE-MPDVEIIDMKKEEKYNw 442
WP_012209232 365 DQSYYQIE-NVSYDAIDTACFRKDLEDIQLILSSATPRVIDLYKAKANFFYLEKIHTRYFTE-MPEVQIVDMKKDEKYNw 442
WP_014296247 364 DQSFYQFD-QLSYDAIEVIYLRSKIEDIKVILSSATPTIREMKNAFEGKINLHKLQERVFTQ-MPDIEIIDIKKEEKVSw 441
6DGD_A       422 -LSPALISRMRQHLQADNQVILFLNRRGFAPALLCHDCGWIAECPRCDSYYTLHQAQ-HHLRCHHCDSQRPIPRQCPSCG 499
WP_081430056 435 -LSDQLVENMRKVLNDGKNILLLTRRKGYSPFVRCLVCGYTVLCPNCDVAMSFHKSE-NLYKCHQCGYVEQVSDICPKCG 512
YP_169272    391 -ISSQLFALLQKNIQAHQQSLVFINKLGFAKALVCKSCGEVVECKKCDKPYTLHTQPyQYLECHFCGSRKPLVTACPSCG 469
WP_039123541 392 -ISNTLFSLLEKNINSHQQSLIFINKLGFAKALVCKVCGDAIECKKCDKPYTLHTQPyQYLECHFCSTRKPLVVVCSSCG 470
WP_066283332 402 -ISRILIQRIEDHLLANNKVLLFLNRRGYSPILICHNCSWIAECLSCNYYYTLHYYD-RQMHCHRCNNQLPMPIQCLKCG 479
WP_014730113 437 iISKRALEEIKKTISAGKQVFVFVHRKGYSNYVVCFTCGNTITCPHCSVSMTYHKAD-NSLKCHYCGYKEPIPKTCPSCG 515
WP_015868880 437 vLSKKALEEIKELLKDEKQIFVFVHRKGFSNYVVCTNCGTVIKCPNCDISLTYHRHG-NILKCHYCGFTTPPFSNCPNCG 515
WP_045088321 443 iFSKKVISSIKNVVAKNKKVIVFTPTRGYANYIVCSECGYIFKCENCDVSLTFHKKE-RKLVCHYCGNEQPLSNFCPRCG 521
WP_012209232 443 iFSKKVVENIEISLKKNKKVIVFTPTRGYANYVICSDCGYIFKCDECDVSLTFHKNE-RKLRCHYCGKESELPNFCPKCG 521
WP_014296247 442 iFTKKVIKEISKTLSNNKKVLIFSPTKGYANYLICTNCGEIIKCKHCDISLTYHKHT-KKLKCHYCGYETNVPPVCPKCG 520
6DGD_A       500 STHLVPVGIGTEQLEQALAPLFPEVPISRIDRDTTSRKGALEEHLAAVHRGGARILIGTQMLAKGHHFPDVTLVSLLDVD 579
WP_081430056 513 AHALYPKGFGTERIERLIKYNFPSARVARIDRDTT-NFRELLNRLFEFQKGELDILVGTRIILHGFTYPKLGLLGFVDID 591
YP_169272    470 AQELFPYGCGTEKIQARIEAKFPYNRVVRFDRANIKTITDLHAVNQLINDNQVDVIVGTQMIAKGHHFENITLVGLINID 549
WP_039123541 471 G-ELFTYGVGTEKIQSRLEARFPYNKIIRFDRNNIKTINDLNGINKMINSNMVDIVVGTQMIAKGHDFENITLVGLVNID 549
WP_066283332 480 LKCLITLGLGTEQLEKIINNIFPDVPVTRIDSDTIYDKKELKKKLEIIYKNGARILIGTQILAKGYICPDITLVSLLNID 559
WP_014730113 516 SMTLSARGFGTERVEHDLQKYFPSAKIMRMDRETIDNPVAYEKALLEISKKESQIIVGTKMITKGLDFPDVEMVLVVDAD 595
WP_015868880 516 SAALSARGFGTERVEYELRNFFPSVKIIRLDKETIESPSDYEKALRMIEQEDAQVVVGTKMIAKGLDFPKVGCVIVVDSD 595
WP_045088321 522 GFKLQSRGYGTERVLTELTKLFPSEPIVRVDRTVIKSFEDLKNTFSFMKEPGRKIIVGTKMITKGLDIKDLDLVVILDSD 601
WP_012209232 522 GFKLQTRGFGTERVMAELAKLFPSQPLVRVDRTVIKTFKDLRNTFNFMKEPGKKIVVGTKMITKGLDIQDLDLVVILDAD 601
WP_014296247 521 SPTLQSRGYGTERVVNEILRFFPSRKVVRIDREIIKTHEDLENAFNEIKKEEPMIIVGTKMITKGLDISDIKLVIVLDSD 600
6DGD_A       580 GALFSADFRSAERFAQLYTQVSGRAGRAGKQGEVILQTHHPEHPLLQTLLYKGYDAFAEQALAERQTMQLPPWTSHVLIR 659
WP_081430056 592 SLLFQPDYNSKIRVYQQLRQGLQMA---PN-ALMVIQTAEPDSDLIKYLFSSEY-CFYQEELERRKSGNYPPYSFLVQVV 666
YP_169272    550 AGLYSSDFNAIEKTAQMIVQVAGRAGRADKPGTIVLQTYQPENKLLQLLVNNDYLEFLDYLLQQRKYAGYPPYAYQAQII 629
WP_039123541 550 AGLYSADFHAIEKTAQTIIQVSGRAGRADKQGLVLLQTYQPENRLLQLLVSKGYLEFLDYLLEQRKYANYPPYTYQAQVI 629
WP_066283332 560 SVLFASDYRAIEKFAQLYIKISNNIIDRTKNSELILQTYYPENPLLLTLIKKGYNALAIEMLAERRDVSLPPYSNHIIIR 639
WP_014730113 596 RLMSFPSYDSPETAFQHISQVSGRSGRAGI-GKAFIQSFNPKNRIIKAAFERDYEAFYKDEIALRKELNNPPFAKIAEII 674
WP_015868880 596 RLINLPRYDATENAFQLITQASGRSGRGTF-GKTLIQSFNPDHPVIQNAVENDFERFFETEIKTRELLKYPPFSYFVEMI 674
WP_045088321 602 RYTHLPDYNAKESTASLIMQVAGRSGRKEK-GKVLIQTFDSDNEIYQAAINHDYTLIAEKELEQRSIYKYPPFTKLFLIM 680
WP_012209232 602 RYFNFPDYNAQESTASLLMQVAGRSGRKEK-GKVIIQSFQPENHIYKSLIDHNFDLIAENDLEQRKIYGYPPFVTLFMIL 680
WP_014296247 601 RYLSFPEYTSFEHTASLLIQVAGRSGRREK-GKVIIQTFKSGEDFFDAVKNHDYDKIIDLELSNRKKFNYPPFSQLIIFL 679
6DGD_A       660 AEDHNNQQAPLFLQQLRNLLQASpLAdE-KLWVLGPVPALAPKRGGRWRWQILLQHPSrVRLqHIVSGTLALIntlpeAR 738
WP_081430056 667 LESDNPSIGWDLISSCVDSLRDE--------EVLGPVEHAVFKLKGKYRFHFLIKTRElDDTlSKLDGKLNEIg------ 732
YP_169272    630 AESKRQGQVLELLNDVYSSISg----sV-NIQVSKPLPALHLKRNNVYRYSLLLTAKTrKEInSVVKQINNKFvi-niPS 703
WP_039123541 630 AESKKETDILEYLNTLYGQLSf----vG-DITISKPLPALHLKKNNIYRYSLLMTSQSrKHInTIIRWIKNTTet-qpPK 703
WP_066283332 640 SEDYNDKSAANFLEKCRQYIEQHsmrdS-KLCLIGPIPAIKFKCAGRFHWQLLLQHPSrYYLqQFFSCVLPKImkypeGR 718
WP_014730113 675 CYGDTEDKSGELAERILSEVKAE-RL-Dt-IEVFGPLTPLLSKLKNSYRMKITIKLPSdSDC-GFLEKIQKRHp------ 744
WP_015868880 675 VEHVDEKRCQKKAEEIAELIGKE-FS-EqFFEIHGPVVPVIKKFKGRFRMKIFLKLKPeASM-KELRELIKKHs------ 745
WP_045088321 681 INNNKMDKVKSISQDIINELEKV-IE-KqQVELLGPVTPIISKLRGNYRLQIILKVYq-HDT-NFLLPIVEKFd------ 750
WP_012209232 681 VNNPSADKAKAKANEIVEELSKI-EN-QvDIEILGPVVPIISKLRGNYRYQIIIKSKq-KNH-DFLYSTLKKHf------ 750
WP_014296247 680 FSNEDKNKAYKEAFDFYEEINDL-FD-N-SIEILEPTEPLIPKLRGLYRYQVIIKDNi-NDQ-EKLMEIIKEYg------ 748
6DGD_A       739 KVK-WVLDVDPIE 750
WP_081430056 733 -WKgWRVFINPPH 744
YP_169272    704 TVK-MCFDIDPIE 715
WP_039123541 704 SIK-LYFDIDPIE 715
WP_066283332 719 KIK-WNIDVDPIE 730
WP_014730113 745 -AD-VQIIINGIG 755
WP_015868880 746 -AQ-IDLVVDGIG 756
WP_045088321 751 -KD-IKVYFNPPT 761
WP_012209232 751 -RD-IKIYVNPPT 761
WP_014296247 749 -KK-CYIYVNPPT 759
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap