Conserved Protein Domain Family
SLC6sbd_SERT

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cd11513: SLC6sbd_SERT 
Na(+)- and Cl(-)-dependent serotonin transporter SERT; solute-binding domain
SERT (also called 5-HTT), is a transmembrane transporter that transports the neurotransmitter serotonin from synaptic spaces into presynaptic neurons. The antiport of a K+ ion is believed to follow the transport of serotonin and promote the reorientation of SERT for another transport cycle. Human SERT is encoded by the SLC6A4 gene. SERT is expressed in brain, peripheral nervous system, placenta, epithelium, and platelets. SERT may play a role in diseases or disorders including anxiety, depression, autism, gastrointestinal disorders, premature ejaculation, and obesity. It may also have a role in social cognition. This subgroup belongs to the solute carrier 6 (SLC6) transporter family.
Statistics
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PSSM-Id: 271399
Aligned: 5 rows
Threshold Bit Score: 948.881
Created: 20-Jul-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
  next features
Feature 1: putative glycosylation site [posttranslational modification site], 1 residue position
Conserved feature residue pattern:NClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on site-directed mutagenesis of rat SERT
  • Citation:PMID 7523405

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
NP_998737    119 RETWSKKIDFLLSVIGYAVDLGNVWRFPYICYQNGGGAFLIPYTIMAIFGGIPLFYMELALGQYHRnGCISIWrKICPIF 198 chicken
P31645        79 RETWGKKVDFLLSVIGYAVDLGNVWRFPYICYQNGGGAFLLPYTIMAIFGGIPLFYMELALGQYHRnGCISIWrKICPIF 158 human
AAI63340      38 RDKWSKKMDFLLSVIGFAVDLGNVWRFPYICYQNGGGAFLIPYVLMAVFGGVPLFYMELALGQFHRtGAISIWkHICPIF 117 zebrafish
NP_037166     79 RETWGKKMDFLLSVIGYAVDLGNIWRFPYICYQNGGGAFLLPYTIMAIFGGIPLFYMELALGQYHRnGCISIWrKICPIF 158 Norway rat
XP_002125543 150 REQWGRKLEFLLSVIGFAVDLGNVWRFPYICFRNGGGAFLIPYFLMIVFGGIPLFYLELILGQYHRtGCISIWgKICPIF 229 Ciona intestinalis
Feature 1                                                         #                              
NP_998737    199 KGIGFAICIIDLYVASYYNTIMAWVFYYLVSSFTTELPWTSCNNAWNTGNCT--TYFSKDNISWAlhsisPAEEFYTRQV 276 chicken
P31645       159 KGIGYAICIIAFYIASYYNTIMAWALYYLISSFTDQLPWTSCKNSWNTGNCT--NYFSEDNITWTlhstsPAEEFYTRHV 236 human
AAI63340     118 KGIGFAICIIALYVSFYYNTIIAWALFYFYSSFSSTLPWTSCDNDWNTENCT--NYFGKDNVTWTnysrsPAEEFYTRNV 195 zebrafish
NP_037166    159 KGIGYAICIIAFYIASYYNTIIAWALYYLISSLTDRLPWTSCTNSWNTGNCT--NYFAQDNITWTlhstsPAEEFYLRHV 236 Norway rat
XP_002125543 230 KGVGYAICLMALYVSSYYNTVIGWAVYYLYSSFAYELPWATCNHSWTDSRCLdkINAAAHNQTWTndtqsPAQQFFDRHV 309 Ciona intestinalis
Feature 1                                                                                        
NP_998737    277 LQVHRSNGLDDLGGISWQLTLCLLLIFIIVYFSIWKGVKTSGKVVWVTATFPYVILFILLVRGATLPGAWRGVLYYLKPE 356 chicken
P31645       237 LQIHRSKGLQDLGGISWQLALCIMLIFTVIYFSIWKGVKTSGKVVWVTATFPYIILSVLLVRGATLPGAWRGVLFYLKPN 316 human
AAI63340     196 LAVHESSGLGNVGYIRWQLMLCLFLIFTIVYFSLWKGVKTSGKVVWVTATLPYVVLLILMIRGATLPGAWKGVVFYLNPK 275 zebrafish
NP_037166    237 LQIHQSKGLQDLGTISWQLTLCIVLIFTVIYFSIWKGVKTSGKVVWVTATFPYIVLSVLLVRGATLPGAWRGVVFYLKPN 316 Norway rat
XP_002125543 310 LEVYKSTGLGDLGPPRWQIVLCLFVVYFILYFCLWKGVRSSGKVVWVTATFPYIVLFILLIRGAMLPGASIGISYYLSPQ 389 Ciona intestinalis
Feature 1                                                                                        
NP_998737    357 WQKLLATEVWVDAAAQIFFSLGPGFGVLLAYASYNKFHNNCYQDALVTSTVNCLTSFVSGFVIFTVLGYMAEMRNEDvSE 436 chicken
P31645       317 WQKLLETGVWIDAAAQIFFSLGPGFGVLLAFASYNKFNNNCYQDALVTSVVNCMTSFVSGFVIFTVLGYMAEMRNEDvSE 396 human
AAI63340     276 WEKLKETSVWVDAAAQIFFSLGPGFGVLLALSSYNPFTNNCYRDAIVTSLVNCLTSFVSGFVIFTVLGYMAEQRNVNvED 355 zebrafish
NP_037166    317 WQKLLETGVWVDAAAQIFFSLGPGFGVLLAFASYNKFNNNCYQDALVTSVVNCMTSFVSGFVIFTVLGYMAEMRNEDvSE 396 Norway rat
XP_002125543 390 WHLLAKPTVWLEAATQVFFSLGPGFGTLIALSSYNRFDNNCYRDAFITSVVNCLTSFMAGFVVFSVLGYMAHLLNKTdIE 469 Ciona intestinalis
Feature 1                                                                                        
NP_998737    437 VAKDMGPSLLFITYAEAIANMpASTFFAIIFFLMLLTLGLDSTFAGLEGVITGVLDEFPhVWSKRREFFVLGLIIICFLG 516 chicken
P31645       397 VAKDAGPSLLFITYAEAIANMpASTFFAIIFFLMLITLGLDSTFAGLEGVITAVLDEFPhVWAKRRERFVLAVVITCFFG 476 human
AAI63340     356 VARDKGPSLLFITYPEAIANMvGSTFFAIIFFVMMITLGLDSTFGGLEAIITAVMDEYPdVLSHRRELFVLGLVVVCFLG 435 zebrafish
NP_037166    397 VAKDAGPSLLFITYAEAIANMpASTFFAIIFFLMLITLGLDSTFAGLEGVITAVLDEFPhIWAKRREWFVLIVVITCVLG 476 Norway rat
XP_002125543 470 EVTTPGVGLLFVVYGQALTTFsGSVFFSIIFFLMIITLGLDSSFGGLEAVITGFSDEYPeTIGKHREKFVLGLLSVSFLL 549 Ciona intestinalis
Feature 1                                                                                        
NP_998737    517 SLATLTFGGAYVVKLFEEYATGPAVLTVVFLEAVAVAWFYGITQFCNDVKEMLGFAPGWYWRVCWVAISPIFLLFVTCSF 596 chicken
P31645       477 SLVTLTFGGAYVVKLLEEYATGPAVLTVALIEAVAVSWFYGITQFCRDVKEMLGFSPGWFWRICWVAISPLFLLFIICSF 556 human
AAI63340     436 SLSTLTKGGAYVVKLLEEFGVGSSIIAIVFLEATAVSWFYGINRFSNDIKSMLGYTPGLFWKVCWVAISPAFLAYIIISS 515 zebrafish
NP_037166    477 SLLTLTSGGAYVVTLLEEYATGPAVLTVALIEAVAVSWFYGITQFCSDVKEMLGFSPGWFWRICWVAISPLFLLFIICSF 556 Norway rat
XP_002125543 550 ALATTTQGGVYLMTLLEVYATGPAIMTVVLLESISVTWFYGINRLCEDIKAMLGFGPGIFWRVCWTVISPLFVSFMIVMS 629 Ciona intestinalis
Feature 1                                                                   
NP_998737    597 LSNPPELRLFDYNYPYWTTVVGYCIGTSSIICIPIYMAYRLIITPGTLKERILKSITPE 655 chicken
P31645       557 LMSPPQLRLFQYNYPYWSIILGYCIGTSSFICIPTYIAYRLIITPGTFKERIIKSITPE 615 human
AAI63340     516 LLNPQTLTLFDYEFPDWSITVGYIIGASSFIWIPIYMVYKLVWTPGSLKQRLAVCLRPE 574 zebrafish
NP_037166    557 LMSPPQLRLFQYNYPHWSIVLGYCIGMSSVICIPTYIIYRLISTPGTLKERIIKSITPE 615 Norway rat
XP_002125543 630 FIFTSNLQYGDYIFPNWSTWIGWAITLSSITIVPVYALYKFIFEPGSPQQRCFSLLRPE 688 Ciona intestinalis

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