Conserved Protein Domain Family
Phage_holin_3_3

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pfam16083: Phage_holin_3_3 
LydA holin phage, holin superfamily III
Phage_holin_3_3 is a family of small hydrophobic holin proteins with one or more transmembrane domains. Holins are encoded within the genomes of Gram-positive and Gram-negative bacteria as well as those of the bacteriophages of these organizms. Their primary function appears to be transport of murein hydrolases across the cytoplasmic membrane to the cell wall where these enzymes hydrolyse the cell wall polymer as a prelude to cell lysis. When chromosomally encoded, these enzymes are therefore autolysins. Holins may also facilitate leakage of electrolytes and nutrients from the cell cytoplasm, thereby promoting cell death. Some may catalyze export of nucleases. LydA and lydB are encoded on the dar operon. The phenotype of a rapid lysis in the absence of active LydB suggests that this protein might be an antagonist of the holin LydA.
Statistics
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PSSM-Id: 435126
Aligned: 33 rows
Threshold Bit Score: 48.7261
Created: 26-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_012147642      10 IYMAVISFFAGVLGMLHREEHK---SKDNIKGkfflLFFGGISGILVGYIAGEACFYWTQSARFSLAFSAFTAWIGAAVL 86  Aliarcobact...
ACR28868          40 TLCLFLSFIGGLASTLQKLAADvapVRSIGLE----IAKDLVVSLVAGLLAFFASEWMNFQAVLEAGVITLAGYGGSRVL 115
jgi:Astex_0353    15 VMAFFFAVSGRILYHTEMVKKGr--RRFWSWR----LLLELPTAVGMGVIAYGGCALVNITGDGQAAIIAVASYLGPHGV 88 
QianUST:TMO_0772  20 GLTVIAAYLGRLLVHVGEVQRGr--RRFFSTH----LLWELVTAIAIGIVADGIAHQLGLAGPPRTAAIVAIAYLGPRGL 93 
Q7D1F1            26 FTTIIASLLGRFMWHGNEARKGr--RKFFGIE----LFWELPVALGMAVIGESAAAYADLGQPASTGLIALLAYLGPRGV 99  Agrobacteri...
WP_013067723      19 VTTMAAALAGRLMWHSTEVRARk--RRFLSRE----LLWELPVAVGMAIIGEAVAAYFELGRTVTTGVVATLAYLGPRGA 92  Rhodobacter...
WP_013554715      15 AWVIALATWGGVTHNIRKLRTGm-iTRFSISE----LVGDIAISGFIGVLTFWLCEAAGFTELWTAFLVGITSHMGTRGL 89  Nitratifrac...
WP_012081859      14 AWVLLLSIWGGTAHTIRKIRTGa-lKRFSFSE----WIGDIVISGFLGVITFYLCEYANIVQPLSAALVGIAAHQGTRGI 88  Nitratirupt...
WP_011871675      15 LWVVGTACLGGTVSFIRKVKQGy-aRAWNITE----FIGEVVTAAFAGLITFYLCDWSNFDIRVTVAFAGIAGHMGSRAI 89  Herminiimon...
jgi:Daci_3260     37 GIVLGTALLGGLASWWMKVRRGe-iLAWNLSS----LIGELCVSAFAGLVAFWLCEYFTLNPLLTSAIVGMSGHAGAKGL 111
WP_012147642      87 LASQ 90  Aliarcobacter butzleri
ACR28868         116 DRAL 119
jgi:Astex_0353    89 NELW 92 
QianUST:TMO_0772  94 EEVI 97 
Q7D1F1           100 EALF 103 Agrobacterium fabrum str. C58
WP_013067723      93 QVAL 96  Rhodobacter capsulatus
WP_013554715      90 MALE 93  Nitratifractor salsuginis
WP_012081859      89 SALE 92  Nitratiruptor sp. SB155-2
WP_011871675      90 FQLE 93  Herminiimonas arsenicoxydans
jgi:Daci_3260    112 IWVE 115
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