Conserved Protein Domain Family
LT_VirB1-like

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cd16892: LT_VirB1-like 
VirB1-like subfamily
This subfamily includes VirB1 protein, one of twelve proteins making up type IV secretion systems (T4SS). T4SS are macromolecular assemblies generally composed of VirB1-11 and VirD4 proteins, and are used by bacteria to transport material across their membranes. VirB1 acts as a lytic transglycosylase (LT), and is important with respect to piercing the peptidoglycan layer in the periplasm. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc) as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).
Statistics
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PSSM-Id: 381613
Aligned: 94 rows
Threshold Bit Score: 144.996
Created: 4-Feb-2013
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1: catalytic residue [active site], 1 residue position
Conserved feature residue pattern:EClick to see conserved feature residue pattern help
Evidence:
  • Comment:corresponds to residue involved in the cleavage of the beta-1,4-glycosidic bond in related lytic transglycosylases
  • Citation:PMID 7548026

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                            #                                                           
AAM68957       5 ILLACSTivhIETLHALIQTESSYNPYAIAvvndiplaQQPKTLQEAElvi--deLEAKKINYSVGLGQVNKGNFakYGV 82  Actinobacillus ...
AAK50141      40 LARACAPnvdPATLAALVRTESGFNPYAIGvvgg-hltRQPASLDEARata--reLLSRGFSYSVGLAQVNERNFakYGL 116 Burkholderia ce...
ESQ92554       8 LAQTCSPgvhPATLERVVRVESSFNPFAIGvvkg-klaRQPKSLEEAKatv--amLEQAGYNYSLGLAQVNKHNLksHGL 84  Asticcacaulis b...
EHR71029       9 LALACAPqvhADTAHALVSVESAFNPWAIGvvgg-alvRQPRHRAEALata--raLQAAGWNFSVGLGQINVGNFerLGL 85  Burkholderiales...
EHT09149       7 LANQCAPevaPQVLERLMKVESSFNPYAIGvvgg-rlaRQPRHKEEAIata--qyLEQAGWNFSLGLGQVNRHNLdkYGL 83  Raoultella orni...
NP_114218     10 LAMQCAPsihPATLTPIVKTESSFNPYAIGvvgk-vlpRQPQSLDEAVlav--kkLVAEGADFSIGLGQINRQHFd-VSR 85  Pseudomonas syr...
KEY48673       7 ITAQCGAevyTEAIHRIISVESSFNPYAIGvvgg-rlaRQPVNKEEAIvta--ryLANAGWNFSMGLAQINRYNLsrYAL 83  Citrobacter ama...
WP_023343373  11 LAAQCAPnvdPDTLARIVKTESGFNPYAIAvvep-pdsIQAKSLDEALavi--anLQKRGLNYSIGLGQINKSNFgsLTA 87  Klebsiella pneu...
WP_007182898  41 LAQECAPdvhHALLGRVATVESSGNPFAIGvvgg-hlaRQPKNLPEALatv--kaLDAGGWNYSMGLVQVNVHNLarYGQ 117 Burkholderia sp...
EAY66696      30 LARARRNvdpEYARRARTYRVGLSIPMRSAwsar-hltRQPRLASTEArasrtrtVVAAASATASASRKVNERNFakYGL 108 Burkholderia ce...
Feature 1                                                                                   
AAM68957      83 TgkqlLDSCTNIKVSEKILSACYaksp--------nksVAEALSCYYAGNFSYGFvre----gkyGITRLLENIQ 145 Actinobacillus actin...
AAK50141     117 DeatmFEPCRNLQAGGAILTECFarssgtg--ratqaaLRAALSCYYSGNFTTGFss-------gYVSRVVASAQ 182 Burkholderia cepacia...
ESQ92554      85 TpdsvFDPCENLRAGGEILIDCYktagnis--tdaqgaLRDALSCYYTGDHKRGYkl-------gYVAKIERALK 150 Asticcacaulis beneve...
EHR71029      86 TvetaFEPCTNLTAMQTVLAECFdrasgfaskavdqvaLRQALSCYYSGNFDTGFrh-------gYVRKVVVAAR 153 Burkholderiales bact...
EHT09149      84 DyetvFDPCHNARAAAGIFNECLrrasvk---fspqqaELAAFSCYYSGNFRRGFlpegq-aqtsYVDRIMAVKP 154 Raoultella ornithino...
NP_114218     86 Pep-vFEPCTNLRMAAAVLEQCYaatsake--qnrqaaLHKAISCYYSGNPRRGFkaeaafggssHVQRVLANAG 157 Pseudomonas syringae...
KEY48673      84 DyetvFEPCSNLRAAASIYQECYdralkv---sdaetaRLKAFSCYYSGNFSRGFiadag-gsssYVQRIANVKM 154 Citrobacter amalonat...
WP_023343373  88 Ke--vLEPCQNLKLAQKVLLDCYnratqet--seqqtaLLRSFSCYYSNNFIRGFmpeky-dgksYVQRIVAAKV 157 Klebsiella pneumoniae
WP_007182898 118 TaesiFEPCTNLKTGAAILKACYarakpqf--aqaddaVRAALSCYYSGDLTRGAa---------YAQKVAAAVP 181 Burkholderia sp. Ch1-1
EAY66696     109 DeatmFEPCRNLQAGGAILTECFarssgtg--ratqaaLRAALSCYYSGNFTTGFss-------gYVSRVVASAQ 174 Burkholderia cenocep...

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