Conserved Protein Domain Family
AmiR

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COG3707: AmiR 
Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains [Signal transduction mechanisms, Transcription]
Statistics
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PSSM-Id: 442921
Aligned: 550 rows
Threshold Bit Score: 66.5189
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_012578043   1 MaarkkseepsinvdevltdeelkavadesepaerkvkpedgpRTVVVAEDEAVNRMDLVAMLEDNGYEVVGQAANGEEA 80 
WP_013371903  50 qlihnadaavlnipvgtismwssrleqtkaipllwwcspisalssteaceaD---------------------------- 101
WP_013624954   1 M------------------------------------------NRAFLVLK-EKLIQEINPVLPlVNYQTISKTENGIEA 37 
WP_014116650   1 M------------------------------------------DRMIVAFPNMEAQRRIVKLLETGGYAPAFCCAAGAEA 38 
WP_015042647   1 M------------------------------------------KRAILISQ-EKQINELNAVLPlANYQAIARTDSGIEA 37 
WP_038468335   1 -mraiiissggyldkridrilknnnikgdietkltrnminvydcvifshnidipnlpklietlvlerkilviyinnvssi 79 
WP_033116875   1 M------------------------------------------DKVIVAFESPKSCERVREIIESSGTAACIICRSAAEV 38 
WP_055242511   1 Mg-----------------------------------------ERIIIASQSERLVSTIRSQVTSSGYEVVGITTDGYDL 39 
WP_123040336   1 ---------------------------------------------mrsllvihheaaatetkeskpgsvltsigfqvtla 35 
WP_128742447   1 Ms------------------------------------------sIVVANSNPEYAKKITAVLRSSGLYVSTVCTTGAQV 38 
WP_012578043  81 VELTRKY-RPDVVCMDVKMPRMDGIAAAGIICDENIAP----VVMLTA-------FSQTDLVKKATGAGAMAYVTKPYEE 148
WP_013371903 102 ------------------------------------------VIV---------------------D----GILTPSMAA 114
WP_013624954  38 LRIAQRL-EPNLIICSWDIQGISALDLVQNLIQANLCP----VILVLE-------QKDQNSLQYAVKTGVHQIITAPIRA 105
WP_014116650  39 VRATRKL-GSAVIVCAFHLRDMTANDLASSL------RdtaaLLVVST----------AANLDFCEGENL-FKLSSPTRR 100
WP_015042647  38 LRIAQRV-EPDLIICGGDIHGISPLDLVQNLVHANICP----VIFVLD-------QKDYVNLDFALKTNVHHIMTAPLRA 105
WP_038468335  80 gyyynvfndiffsMVTE-------ISL----------------------------------------------------E 100
WP_033116875  39 KRTVSKH-HISTVVCGFKLPDESAQSLFEDL------PpncaMLMVAV----------QGMLDLCQNDDI-FLLASPVSR 100
WP_055242511  40 IRRSKAL-APEVVIVDEDLPGMSIVSLVETLIHERQA-----VLLLGKsyqkfyyRQDPy-F---------EFCEKPVQS 103
WP_123040336  36 dgeeraargiaeadaavlhlpvsrikawseflhqwkrmpliwwcsafsasasldaceddvvI----D----GILTPHMES 107
WP_128742447  39 MDFTSKHyHGGIVVCSVKLRDMAAVNLPRMVGS--Ay----dFLFLVS-------SQLASM-CESLE---QATLMLPISR 101
WP_012578043 149 SKLLPTLEVAMGRFAEINDLldnverserklkettdqlketEEKLKKAEDTLEERKLVDRAKGLLMDKADFSEQGAFRWI 228
WP_013371903 115 HELNWALHFSAKHFFERQHW---------------------QSERKQLTARLEERKWIDMAKGILGEVNGIPEAEAYDLL 173
WP_013624954 106 VDIIAGVVQAEHRYHTELMH---------------------RDEIRKLNDEVTTRKILYQAILKLIP-LGLEEEAAYALI 163
WP_014116650 101 ADFFASLDLL---RRF-ESK---------------------NLRHPAPPRQEEEQRLIRRAKELMMDINRMTEAEAHRFL 155
WP_015042647 106 IDVVSGIAQAEHQFNREIEQ---------------------RKEMNKLNDELKTRKLVYQAILILIA-GGMDEETAYASI 163
WP_038468335 101 IELPIVINNNSKYTKEIVNL---------------------EEEITQLKESNELLKLTNKAKLVLMR-KGFTEAESHKLI 158
WP_033116875 101 GDLVASVRML---IQM-GHR---------------------LEKFVRPQRSEEEMALIDEAKSLLMERHGMTEEQAHRFL 155
WP_055242511 104 IVLSTMLRVLTKYGQTVRQL---------------------ESKVNELEQAQKTEKTIRLAKRALQQNQNMTEDEAHRYI 162
WP_123040336 108 HEIHWALQFAARAFFQREQW---------------------LEERKQLLARVEERKWIDQAKAILCEIKGINEAEAYDML 166
WP_128742447 102 MDLISTVNMF-LNLADYTSL---------------------TIKKKLASENLDEKQSIKNAKDLLMKRNNFTEPQAHRFI 159
WP_012578043 229 QKTSMDQRIPKKRLAQAIIAKYGDP-K 254
WP_013371903 174 RKKAMNERKRIVDVAISIVKAQQML-K 199
WP_013624954 164 RKQAMTTRKSIRSVAVSIVKGLwLPtE 190
WP_014116650 156 QKQSMDTGLKLTETARIIVDSYTRG-A 181
WP_015042647 164 RTEAMTSRKTIRAIAAEVVKGTwRP-- 188
WP_038468335 159 QRKSMELRVSKLKLVNLIIENKI---D 182
WP_033116875 156 QKKSMDSGAKMVQTAKLVLGGQ----- 177
WP_055242511 163 QKRSMELRISKLELAERILKSYKKN-S 188
WP_123040336 167 RKQAMNERKRMVDVATSIVKVYEIL-Q 192
WP_128742447 160 QKKSMDKGKKMAEAALIILNS------ 180
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