2IN5


Conserved Protein Domain Family
YjbF

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pfam11102: YjbF 
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Group 4 capsule polysaccharide lipoprotein gfcB, YjbF
This family includes lipoprotein GfcB (YmcC), involved in group 4 capsule polysaccharide formation. YjbF is a family of Gram-negative bacterial outer-membrane lipoproteins, predicted to be a beta-barrel and possibly a porin that is one of four gene-products expressed from an operon, yjbEFGH, which is regulated by the Rcs phosphorelay in a RcsA-dependent manner, similar to that of other exopolysaccharide biosynthetic pathways. It is highly possible that the yjbEFGH operon encodes a system involved in EPS secretion since none of the products is predicted to have enzymic activity, the products are all secreted and YbjF and H are predicted to be beta-barrel lipoproteins similar to porins. It may be that the operon products play some role in biofilm formation and/or matrix production.
Statistics
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PSSM-Id: 431654
Aligned: 21 rows
Threshold Bit Score: 153.285
Created: 24-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2IN5_B                   9 VDTFRASLFD-----------------------NQDITVADQQIQALPYSTXYLRLNEGQRIFVVLGYIEQE------QS 59  Esche...
tigr:AHA_2876           38 IETLGYVFHK-----------------------ENEIVLTSTQLRQLPYASAYIKVGDLPQALVVLAYVNGD------RL 88 
CASKLGSI:C427_1652      42 YQTLKIVFSE-----------------------QQAAQLSFPEVQQSEIDVISVKRGERPSAIMALAYLENN------QH 92 
DSC:DSC_07640           22 YDALRTIVAS-----------------------HRELAPTPAQVAALPYAQILLNWPDGS-ALMVLGNDDAG------QT 71 
QianUST:TMO_0685        33 FDTLQAVFFR-----------------------NSAPTAEEIDVDKLPVSAILVEFGRGS-ARVALADTRDG------TL 82 
WP_025312414            40 ARNLTSAILPggeae-------------tttasEARAMLTRDRIERINRPLLLVEWPTVDGAELFSLVGENGg-----VE 101 Rosei...
WP_011750365            28 GREANPLLIAartagsavsgmrggeaeqapaapRTPEQMAAEALRVNPAPLVMVNFESLGRTQVMAMTGQNGa-----MR 102 Parac...
goetting:PGA1_65p00150  34 QVELLSNLSDrigarls----------ggkadqPARPPLTRAGLNEIKDPYIEVTIEKNDVFAYLSRQQLRRddspgtVA 103
WP_012187250            57 WDDLVAVVQTrlep---------------dpaaGTETRITRAMLAGVTDPLIRVTRLPDGPVATLVPAARGGpaa-apLI 120 Dinor...
Q5QWW3                  25 RATIEYAFEG-----------------------GEDAELSQEKIDSFPYTSLYAQWSDNPRSLIVLGYVNKPd-----DW 76  Idiom...
2IN5_B                  60 KWLSQDNAXLVT-HNGRLLKTVKLNNNLLEVT---------NSGQDPLRNALAIK----DGSRWTRDILW-------SED 118 Esche...
tigr:AHA_2876           89 SWMSADGVMFIT-EHGRLVKTIGLPNDLRYLG---------YMDQDPLRIARLDKl---SSMVWYSVAEW-------SHK 148
CASKLGSI:C427_1652      93 KWVSSDNVMLVM-EKGRVVRTLGLDNNLLYTS---------NSEMDPLKLLQFTLkgepKSKTWSRIVDR--------SS 154
DSC:DSC_07640           72 SWYSNDRHMVYL-RDGLLVGSTGFAQDAMQIR---------IEGDNPFDELTRAA----QATTVIRRYDW-------MPG 130
QianUST:TMO_0685        83 VWRARDRAEVHT-RQGILVRTVGLPDNLRVVRfeglpggltTPVPDAA-----------GAGGYIRLFDM-------PSR 143
WP_025312414           102 TWRSPEDRGLALtSDGVLRSTRGYGADLMASE----------------ATALVATwsgqRAGSYNRIMVHldgelreQSR 165 Rosei...
WP_011750365           103 TYMAPSKEALIL-RDGMLIGTRGLGNDLSVVE-----------------PQTEALiragRSGSAQRVMRYysgdgleRP- 163 Parac...
goetting:PGA1_65p00150 104 VWRTEDNISLTL-RNGVLVATRNLGNDILSSS-------------------ALVGegagGPARSGARRYHirgldngAWQ 163
WP_012187250           121 TWRGRDPVTLTT-RGGLLVATRGLGRDLMSSD-----------------LRGLAQalraGGGRYARSHVVlvgntdaLT- 181 Dinor...
Q5QWW3                  77 HFITAEKETLVL-RNGRVIRTQALNKNLLAVS---------NLKDDPLRCIVTSQa--nCPTHWRRQYDI-------EMA 137 Idiom...
2IN5_B                 119 NHFRSAtLSSTFSFAGLETLNIAGRNVLCNVWQEEVTSTR------PEKQWQNTFWVdSATGQVRQSRQXLGAGVIPVEX 192 Esche...
tigr:AHA_2876          149 YTSGYP-LSMHYRRVGNEVLEVMDKPYTTTIIEESVTASP------SEVQWNNYFWIdEHSGQVRKLKQQLGPSLPVIEM 221
CASKLGSI:C427_1652     155 DEYGYP-IESTFNQASADTIQALNLNIETVLYIENLSYMApsnylrFNTNWKNYFWF-TNNGVLIKSIQQDSPLSESLEI 232
DSC:DSC_07640          131 YRYG-AvVRGRLVRRGRETVRILGTDRQLDRFEEVLEGPG--------LRALNQYWVdPASGEIWKSRQLVAPGLS-VEI 200
QianUST:TMO_0685       144 RLYDIR-ADCKLEEAGQEQVTVGKYTFDTSVYDEDCTVES------MRWRFTNRYWYeSESKRIWRSRQVISPELGTMEI 216
WP_025312414           166 SQ---SlHVCSVRATGRETIDIYDIHYTVTRLVETCETPA--------GSYDNQYWV-EANGTVRRSEQWVSPEVGHLLI 233 Rosei...
WP_011750365           164 -----LsFDCTVGPGPKPGV-----------IVESCEGHG--------ARFQNNFMP--QGGHLPVSRQWAGPRLGYITI 217 Parac...
goetting:PGA1_65p00150 164 -----LdMLCSRRDLGADPIVIVELRYPTRHIEERCQPSQp----gRGGEIINDYWVdSRSGRVWQSRQWAGPNVGYLRI 234
WP_012187250           182 -----LsFDCTLRAEGAETITILERSVATTRFTEACAGPT--------GTFGNTYWRgAGDGTLWQSQQWAGPDFGHVRI 248 Dinor...
Q5QWW3                 138 NKVVSReASSEFSVQDKQVLNLPIGPVNTTYVVEKGEFTL------SGQEFVNEFWL-EDDGHVVKSRQTLFPGGDKLTL 210 Idiom...
2IN5_B                 193 TFL 195 Escherichia coli K-12
tigr:AHA_2876          222 TFL 224
CASKLGSI:C427_1652     233 TYL 235
DSC:DSC_07640          201 TQL 203
QianUST:TMO_0685       217 TLL 219
WP_025312414           234 ERL 236 Roseibacterium elongatum
WP_011750365           218 QTL 220 Paracoccus denitrificans
goetting:PGA1_65p00150 235 RQL 237
WP_012187250           249 ERL 251 Dinoroseobacter shibae
Q5QWW3                 211 TQV 213 Idiomarina loihiensis
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