3I45


Conserved Protein Domain Family
PBP1_As_SBP-like

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cd06330: PBP1_As_SBP-like 
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periplasmic substrate-binding domain of active transport proteins
Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic (As) and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Statistics
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PSSM-Id: 380553
Aligned: 97 rows
Threshold Bit Score: 280.986
Created: 6-Mar-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ligand binding
Conserved site includes 10 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Structure:3I45; Rhodospirillum rubrum putative twin-arginine translocation pathway signal protein binds nicotinic acid, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                ###  
3I45_A      7 RIGEINSYSQip-aFTLPYRNGWQLAVEQINaaggllgGRPLEVISRDDggdpGKAVTAAQELLTrhGVHALAGTFLShV 85  Rhodospirillum rub...
OUX62626   45 RLGLLLSATGaganYSEGGIKAVTNAVAEINgrggflgRHPVELHFRDTqskpDSAAREARDVITrdMVRAVIGTWSSaE 124 Afipia sp. TMED4
OIP08905   37 KLGVLLPSTGtganYMAHCIKGLPVAIAELNkrggllgKHPVQMIYRDTetkpDVGAREAKSLILndKVDGIFGTYSSaV 116 Betaproteobacteria...
KPJ77431   95 RLGVALGLSGtgapYCKEAVEGLEIAINDINsqggflgKHHIQLFIRDTetdpQTAKNAVSHLVEkeKIHTLIGTYSSaC 174 Deltaproteobacteri...
KPK48401   52 RIGVCLPTTGsganYSERPIKGLPLIAAEINqrggllgKHPIELHFRDTqtkpDVGAREARSLILneKVQTVIGTWSSaV 131 Thiotrichales bact...
SME91018   40 RIGLVAGISGacgpLVDGEVKAVELGVDQLNakg-gllGRPIELIKRDSktkpDEGAKLARELVLndKVDVLTGTCSSaV 118 Tistlia consotensi...
AFM27275   34 RLGFVADVSGvgatFYKGQKAAVDLFIEEINaag-gvmGKKLEVVVRDAqlkpDIGANMARELILseKCDFLIGPTSSaV 112 Desulfomonile tied...
OGP50803   33 VVGFIHSMSGamsmYGISSEAGGQIAVEEINaag-gilGRPLKMITRDDklnaETGLREAKDLILseKADFLTGTISSaV 111 Deltaproteobacteri...
OJU37401   22 KIGIATDLTGiaaaYANSQINGLRQAIDEINaag-gllGREVALVVRDSqakpDLGVSHARDLITseKVSLLIGPVSSgV 100 Rhizobiales bacter...
GAQ26543   26 KMVGSLDLSGpvaeVGKDTLLGIQFAVDALNkgg-gvlGRPVTFDYQDNgsnaQRAITQSTTMVRd-GAVFLMAPQASgS 103 Ralstonia sp. NT80
Feature 1                        ###                                                 # #      
3I45_A     86 GLAVSDFARq-RKVLFMASEPLTDaltwekgnrYTYRLRPSTYMQAAMLAAEAAklp----itRWATIAPNYeYGQSAVA 160 Rhodospirillum rub...
OUX62626  125 ALAVEEIINe-HKVLHFAANSNSSrlthenfspWFFQYSPDTRMESGAIAVVLAdmakknnwkTFVSIGQDYeWARAQQA 203 Afipia sp. TMED4
OIP08905  117 ALAVQEIIHe-HKVLHFAATSNSSkitqdnytpYTYQFCPDSNMQSGAVVVAVAkmakksnwkTYVSLGQDYeWGRDTHK 195 Betaproteobacteria...
KPJ77431  175 ALAVKPILQs-ARVLHIAPISNSEeitkidpseYTYSVVPNTYMMSKAVVMGTArlarekgwsKYVTIASDYaWGRSSQE 253 Deltaproteobacteri...
KPK48401  132 AMAIQEITHe-HKVLHLAATSNSSkivnenytpYSFQFGPNSRMQSGATVVAVLkmikskgwkTYVTLGLDYeWGRDAQR 210 Thiotrichales bact...
SME91018  119 MLAVSAVSKe-LKTPFYSTIGNSQkanieafqpYFWQTQAHALMEAAAAAEFVAgha---dwkRVVPMGFDYeWGHTSVD 194 Tistlia consotensi...
AFM27275  113 ALAVTKVAKe-FKKIVYFHTSNAEaltttdfqpYMFQVVPNTGIEGRGIANYMAqkp----ykKYGYIGPDYaYGHDQFN 187 Desulfomonile tied...
OGP50803  112 ALAISNYVKr-EKKIFLVNISQSSslteenwhrYIFRIDTNAVPYWGYAPAVALakkw--kdkKIVSLGFDYeTGKNSLK 188 Deltaproteobacteri...
OJU37401  101 ALGISNLAKq-NKVPVIMTAPNTPrlamelfhpYFFSVVPSGLMESRAIAAAIGkk-----arSFGFIGADYeASHQGLA 174 Rhizobiales bacter...
GAQ26543  104 TLGVTKMVSakLKVPMCVSASGSEdvtmkdfqpYMFSVTPNAYTEMRGAAMQLAkqp----ykRYALLAADYsGARTNEA 179 Ralstonia sp. NT80
Feature 1                                                     #                           #   
3I45_A    161 RFKELLlaarpeVTFVAEQWPalykldAGPTVQALQQAep-eGLFNVLFgadLPKFVREGRVRGLFa--gRQVVSMLtge 237 Rhodospirillum rub...
OUX62626  204 GFLEAFsklapdVKLVKEFWFkigetsFGPYISAMMATkp-dFCFGAIAgkdNVTFIEQAKPAGLFr--rTVYPGGLlsl 280 Afipia sp. TMED4
OIP08905  196 GFTTGLakvapgIKEARQLWFklgetdFTSYITAIMAAkp-dFMFGAVAgkdAQTFMQQAGQMGLFk--rVPFPGGLipv 272 Betaproteobacteria...
KPJ77431  254 IQVDLFrqaapdITLLAAYWPrlgqtrFNSFIVDILAQkp-dFVLSSIAgadNAFWLRDARDYRLFk--sVENPGGLisv 330 Deltaproteobacteri...
KPK48401  211 VFVDKLtkespeTKLTKVFWAklgetdFTSYITAIMALkp-dFMFGAIAgkdNETFLQQAKPAGLFk--rVAYPGVFlpv 287 Thiotrichales bact...
SME91018  195 TFVAHLkqlrpdMEIADPLFPkigesnMTSYITAALAQkp-dVVYAAVFgggLINLIKQGKSFGFFq--rASLVTLMtvd 271 Tistlia consotensi...
AFM27275  188 AFKGELaklkpdAEIVEVVWVklgetnYSPYIPTLMAKnp-eAIFSSLWgggLSTFIKQAKPYGIFg--kAALCSLFdld 264 Desulfomonile tied...
OGP50803  189 AFKEKYlelvpdAKIVDELWAplgttdFTPYISKIANSganaFFLACIYgggELAFSKQAYAFGLYd--kMHAIQPCagd 266 Deltaproteobacteri...
OJU37401  175 YFKPWLkkvnpgAEVTVESFPklgepdHTSYITQLMSArp-eVVFSYLWgadLVGFVKQAKPYGFFd--rTIFASMFffd 251 Rhizobiales bacter...
GAQ26543  180 RFKAFLkemnpqAEIVIEEFPklgaidYTASLNKILAAkp-dYVFAVLYgtdLVTFSKQATALGFFkqinNRFFAVYdes 258 Ralstonia sp. NT80
Feature 1                                                                                     
3I45_A    238 pey--lnplkDEAPEGWIVTGYPwydid---taphRAFVEAYRARwk--edPFVGSLVGYNTLTAMAVAFekaggteset 310 Rhodospirillum rub...
OUX62626  281 se---lqqlkDTLPRGMIGVARApfyall-dqpvmQKYLKMYQAAygadayPSDWACMHYDAVYGLEQAItkagsiened 356 Afipia sp. TMED4
OIP08905  273 nd---lkqqrKTLPRGIIGLARCpffahl-kepimQAYIKRDLAAfgkddyPDDWACMYYDALGGLEQGAkkagsistea 348 Betaproteobacteria...
KPJ77431  331 te---litqaSSIRRGLYGRCRApffahm-dnpamVRFVADYRAKfd--rfPSDWAVLLYDAVHILRQGVekaggidted 404 Deltaproteobacteri...
KPK48401  288 te---lmqqrKTLPRGIIGLNRCpffahm-dnpimQKYVKMYQDKfgkddyPDDFACMYFDALNGLDQGVtkagstnsds 363 Thiotrichales bact...
SME91018  272 tm----qalaKDMPAKGVSGYARapffelmgnpkaKAFVEAYRERyg--vyPDDWATSSYDGLMYLAAAIeaaggtdadk 345 Tistlia consotensi...
AFM27275  265 ml----rvtgQDMPEGLLGYARCpfyav--dnpemKAFVKKYYDKnq--ewPADWAIMAYDGLIALTEAIkkanstdsdk 336 Desulfomonile tied...
OGP50803  267 ietwfsvkkgDPYPKGALATCRYpfwai--kdpksKQFVEKHNKKvg--flPSYGAMNQYLIMYALKAAIekvgavdtek 342 Deltaproteobacteri...
OJU37401  252 dl----ralgADMPDGIVGQMRApffal--egarmEEFTKNYRAKfn--eyPADWAIMSYEAMQIFALAStkagtvdsdp 323 Rhizobiales bacter...
GAQ26543  259 vl----kalgDSAAVGGNGVQRApadyltksgpqaKAYVDQFKAKhg--fpPSDWSTLAYDCVMTWAQAVntakstdadp 332 Ralstonia sp. NT80
Feature 1                                         
3I45_A    311 l-vetlkdmafstPMGPLSFRAsDHQSTMGAWVGRT 345 Rhodospirillum rubrum ATCC 11170
OUX62626  357 v-rkaltgatidtCRGKATFRScNNQLGIPSYVGTV 391 Afipia sp. TMED4
OIP08905  349 i-ikalkgatidtCRGKRAFRTcSNQLEVPSYVGEV 383 Betaproteobacteria bacterium CG2_30_68_42
KPJ77431  405 v-rkalkamtvetTRGRFTFRGiDNQLSCSAYFGRV 439 Deltaproteobacteria bacterium SG8_13
KPK48401  364 v-kaalkgatidtCRGKLTFRDcNNQLDAPSYVGEV 398 Thiotrichales bacterium SG8_50
SME91018  346 lmaavtsitvhglRGDALKVRDfDHLMNAPVYVGDV 381 Tistlia consotensis USBA 355
AFM27275  337 v-vkalegmkfksLRGERYIRAeDHMANVGIYVGVT 371 Desulfomonile tiedjei DSM 6799
OGP50803  343 i-inalegmvldtFVGKIPIRPyDHQAMMPNWYGIM 377 Deltaproteobacteria bacterium RBG_13_51_10
OJU37401  324 v-vgaieaiqydgLRGQISFRKeDHQANVPSFIGTS 358 Rhizobiales bacterium 68-8
GAQ26543  333 v-iraveasefntMRGKLRFGKlDHQADVPVFFGRI 367 Ralstonia sp. NT80

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