Conserved Protein Domain Family
CTF_NFI

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pfam00859: CTF_NFI 
CTF/NF-I family transcription modulation region
Statistics
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PSSM-Id: 459967
Aligned: 11 rows
Threshold Bit Score: 271.401
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q5VW26       209 EDSFVKSGVFNVSELVRVSRTPITQGTGVNFPIGEIPsQPYYHDMNS----GVNLQRSLSSPPS---SKRP--------- 272 human
XP_004911089 217 QESFVTSGVFSVTELIQVSRTPVVSGTGPNFSLGELQ-GHLAYDLNPt---GTGMRRTLPSTSSs-gSKRH--------- 282
XP_018869994 249 QESFVTSGVFSVTELIQVSRTPVVTGTGPNFSLGELQ-GHLAYDLNPa---STGLRRTLPSTSSs-gSKRH--------- 314
Q4SRP6       319 EDSFIKSGVFSVAELVRVARMPITLRAAVNFSMADMSsQPYYHDLNS----GVGLHRSLSSPPG---SKRP--------- 382 spotted green p...
XP_016846635 213 QDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADLE-SPSYYNINQ----VALGRRSITSPPSsssTKRP--------- 278
XP_004570393 206 QDCFVTSGVWNVAELVRVSQTPVATATGPNFSLADLD-SPGYYNINQ----VTLGRRSITSTPSt-rTEMElyaslprss 279
XP_016397727 217 QESFVTSGVFSVTELVQVSRTPVVTGTGPNFSLGELQ-GHLAYDLNPs---GVGMRRTLPSTSSs-gSKRH--------- 282
XP_011612716 207 QESFVTSGVFSVTELVHVSKTRVITVVGPGFSMGELH-GHLAYDLNPsvnqPVGLRRSLASTSSs-gSKRH--------- 275
XP_030288726 235 QESFVTSGVFSVTELVQVSRTPVVTGVGPSFSMGELQ-GHLAYDLNQsvnqPVSLRRSLASTSSs-gSKRL--------- 303 gilthead seabream
XP_029907136 233 QDCFVTSGVWNVAELVRVSQTPVATASGPNFSLADLDsSPGYYNINQ----VALGRRSLASPPStssTKR---------- 298 pinecone soldie...
XP_023809833 257 QDSFVTPGVFTVAELVRVSQTPIAAGTGPNFSLADLD-SSSYYSMSP-----GAMRRPLPSTSSsssAKRI--------- 321 Japanese medaka
Q5VW26       273 -KTISIDENMEPSPTGD-FY----PSPSSP-AAGSRTW-HERDQ-------------------------DM-SSPTTMKK 318 human
XP_004911089 283 -KSGSMEDDIDTSPGGE-YY----TSPSSP-TGSNRNWaDDVEG-------------------------GM-SPTVKKSE 329
XP_018869994 315 -KSGSMEEDVDTSPGGD-YY----TSPSSP-TSSSRNWtEDMEG-------------------------GI-SSPVKKTE 361
Q4SRP6       383 -KTVSMDENMDTSPTGPdFY----SSPSSP-ASSRANW-HERDG-------------------------DM-SSP-TMKK 428 spotted green p...
XP_016846635 279 -K--SIDDSEMESPVDDvFYpgtgRSPAAG-SSQSSGWpNDVDA-------------------------G----PASLKK 325
XP_004570393 280 nKRKSIDDSEMESPVDDvFYs--gRSPAAGsSSQSSGWpNDVDAvqhhlasvqerkikhesdgvqfpyhGL-SSPGSLKK 356
XP_016397727 283 -KSGSMEDDIDTSPGGE-YY----TSPNSP-ASSSRNWqEEMEG-------------------------GI-SPTVKKTE 329
XP_011612716 276 -KSGSMEDEVD-SP-GE-YY----HSP-SP-ASSSRNWtEDVEG-------------------------GL-SPPVKKTE 319
XP_030288726 304 -KSGSMEEEAD-SPGGE-YY----HSPSSP-ASSSRNWtDDMEG-------------------------GL-SPPVKKAE 349 gilthead seabream
XP_029907136 299 -K--SLDDSELESPTDDvFYp--gRSPAAS-SSQSSGWpNDMDA-------------------------GL-SSPGSLKK 346 pinecone soldie...
XP_023809833 322 -K--CMEEDVD-SPGEEsYYpsqgRSPGSG--SQASSW-HDVEP-------------------------GMpSPPSTLKT 369 Japanese medaka
Q5VW26       319 PEKPLFSSASPQDS----------SPRLSTFPQHHHPGIpgVAHSVIStRTPP-PPSPLPFPTQAILpPAPSSYFSHPTI 387 human
XP_004911089 330 LDKSPFHSPSPQDT----------SPRISGFTQHHRPVI--AVHSGLA-RSPH-TSTTLHFPTSSLLpQAASTYFPHTAI 395
XP_018869994 362 MDKSPFNSPSPQD-----------SPRLSSFTQHHRPVI--AVHSGIA-RSPH-PSSALHFPTTSILpQTASTYFPHTAI 426
Q4SRP6       429 PDKPLFSPTSPQDS----------SPRLSAFPQPHHPGLtgVGHSVIStRSPP-PHSPLQFSASAILpPAPSSYFPHTTI 497 spotted green p...
XP_016846635 326 SGKLDFCSALSSHT----------TSPRMAFTHHPLPVL-----AGVRpGSPRaTASALHFPSTSII-QQSSPYFTHPTI 389
XP_004570393 357 PGKFDF-SALSSQT----------RSPRMAFTHHPLPML-----AGVRpGSPRaSASALHFPSPSII-QQSSPYFTHPTI 419
XP_016397727 330 MD-----SPSPQES----------SPRLG-FTQHHRPVI--AVHSGIS-RGPH-PSSSLHFPGAPILpQTASTYFPHTAI 389
XP_011612716 320 VD-----SP-PQKD----------SPRLGSFTQPHRPVI--AVHSGLS-RSPH-PSPSLYFPSAP--------YFPHGAI 371
XP_030288726 350 LD-----SPSPQED----------SPRLGSFTQHHRPVI--AVHSGLS-RSPH-PSSALHFPSSS--------YFPHGAI 402 gilthead seabream
XP_029907136 347 PGKFDF-NALSSQT----------RSPRMAFTHHPLPVL-----AGVRpGSPRaSASALHFPSSSII-QQSSPYFTHPTI 409 pinecone soldie...
XP_023809833 370 SGRSGFCGPAPSPSgtsssssscsSSPRMAFT-HQRPVI-----AGPR-ASPHaPPSSLHFSSSPIL-QQPGSYFSHPAI 441 Japanese medaka
Q5VW26       388 RYPPHLnPQDTLKNYVP--SyDPSSPQTSQ-----PNGSGQvvGKVPGHF--TPVLAPS-------PhpSAVRPVTLSMt 451 human
XP_004911089 396 RYPPHLnPQDPLKDLVSlaC-ETSSQQPGP-----LNGSGQ--VKVSSHYisTQMLAPP-------P--PGMPRLSLSS- 457
XP_018869994 427 RYPPHLnPQDPLKDLVSlaC-DPASQQPGP-----LNGSGQ--LKMPSHClsAQMLAPP-------P--PGLPRLALPP- 488
Q4SRP6       498 RYPPHLsPADPLKSYVP--SyDPSSPQSSQ-----PNSSGQvvGKVPGHF--TPVLAPS-------PhhGAVRPVSLSMp 561 spotted green p...
XP_016846635 390 RYHHHH-GQDSLKEFVQfvCsDGSGQGSGQ-----PNGSGQ--GKVTGSF-----LLPP-------Pp-PVARPVPLPMp 448
XP_004570393 420 RYHHHP-GQDPLKEFVQfvCaDGSGQAAGQ-----PNGSGQ--SKMPGSF-----LLPP-------Pp-PVARPVPLPMp 478
XP_016397727 390 RYPPHLsSQDPLKDLVSlaC-DPSNQQPSP-----LNGSGQ--VKVSSHYisSQMLAPP-------Lp-PGLPRLTLPP- 452
XP_011612716 372 RYPPHL-AQDPLKDLVSlaS-DPVDKPPSS-----LNGSNH--VKVSSHYisSQLLVPPgptpslaPppPSLHRPTLPA- 441
XP_030288726 403 RYPPHL-AQDPLKDLVSlaC-DPANQTPSS-----LNGSNQ--VKVPSHYisSQMLAPPgpaptlcPapSSLPRPTLPA- 472 gilthead seabream
XP_029907136 410 RYHHH---QDPLKEFVQfvCtDGAGQPSAQ-----PNGGGQ--SKMPGSF-----LLPP-------Pp-PVARPVPLPMp 466 pinecone soldie...
XP_023809833 442 RYHP----QETLKEFVQlvCpD-SAQQAGQvgflnPNGSSQ--GKVHNPFlpTPMLPPP-------PppPMARPVPLPV- 506 Japanese medaka
Q5VW26       452 DTKPi-TTSTEGEA-ASPTATTY--------TASG-TSQANR--YVGLSPRDPSFLHQQQ 498 human
XP_004911089 458 DTKS--TTASDGST-SSPTSPTY--------SAPS-TPPTNRs-FVGLGPREPGSIYQAQ 504
XP_018869994 489 ATKP--ATTSEGGA-TSPTSPSY--------SPPD-TSPANRs-FVGLGPRDPAGIYQAQ 535
Q4SRP6       562 DTKPi-TTSTEG----------Y--------SAPG-TPTANR--FVGLSPRDPAFLHQQQ 599 spotted green pufferfish
XP_016846635 449 DTKSt-STNPEGGA-PTPTSPSF--------SAPGsSSSANR--FVGIGPRDGNFLNIPQ 496
XP_004570393 479 DSKPn-STPPDGGL-SSPASPSY--------STPG-ATAPNR--FVGIGSRDNNFLNIPQ 525
XP_016397727 453 ESKSs-TTSADAAA-SSPTSPTY--------SAPG-TPPANRs-FVGIGSRDTGSLYQAQ 500
XP_011612716 442 ESKAttTTSSERGT-NSPTSPTC--------STPG-TPPSNCptFIGVTPQDAGELYQAQ 491
XP_030288726 473 ESKAt-TTSSDG-VtNSPTPPTY--------SAPG-TPPANRtsFVGVTPRDPGGLYQAQ 521 gilthead seabream
XP_029907136 467 DSKPi-STPTDGGL-SSPASPSYstpgstapNRFVgIGARD---------N---FLNIPQ 512 pinecone soldierfish
XP_023809833 507 DAKPpsTSSTEGGG-NSPTSPTY--------STPT-TSPAQR--FVSVGPRDPGF-NIPQ 553 Japanese medaka
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