2JDI,1AQT,1BSH,1E79,1QO1,2CK3,2E5Y,2HLD,2QE7,2RQ6,2XND,2XOK,3OE7,3OEH


Conserved Protein Domain Family
F1-ATPase_delta

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cd12152: F1-ATPase_delta 
Click on image for an interactive view with Cn3D
mitochondrial ATP synthase delta subunit
The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit.
Statistics
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PSSM-Id: 213395
Aligned: 327 rows
Threshold Bit Score: 62.144
Created: 6-Sep-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 22 residues -Click on image for an interactive view with Cn3D
Feature 1:epsilon subunit interface [polypeptide binding site]
Evidence:
  • Structure:2XND, Bovine F1-C8 sub-complex of ATP synthase, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                #                #               ## #               # ###              #
2JDI_H        16 MSFTFASPTQVFFNsanvrQVDVPTQtGAFGILAAHVPTLQVLrPGLVVVHaedGTTSKYFVSSGSVTVnadssVQLLAE 95  cattle
2XND_H         2 MSFTFASPTQVFFNsanvrQVDVPTQtGAFGILAAHVPTLQVLrPGLVVVHaedGTTSKYFVSSGSVTVnadssVQLLAE 81  cattle
CAJ71318       6 FKLNIVTPTKIMEKni--tYIRLKDEtGFFGILKGHTNFLTVTvPSLCYYTdvnGKEVFLAVDEGIVSVre-giVTITSR 82  Candidatus Kuen...
ZP_01444248    5 LHLVITTTMDVVVDdaevtSLRAQDEsGGFGILPGHTDFLTVLpASIIRWRsagRPEQFAGVRAGLLSVnggreIAIACR 84  Roseovarius sp....
YP_002731459   4 LSLNLITPEKKETFni--rYLSLEDVeGSLGIYPEHQDFITVLtRSIGHFVdqeGKKIYIAYDYGILNVek-nrVSLVTR 80  Persephonella m...
YP_002799152   5 LRLRIVTPQQVLVDctdvvAFRGEDAsGGFGLLPGHVDYLTVLvPTVLRWRragGEQGFCAVHGGVLSLsg-geLRVACR 83  Azotobacter vin...
YP_003110381   5 FDAVIATPEEVVFEga-veELVMRVPtGDIAFLANHGRFVGEVeVCVAKLWladGTQEELVIDGGLVRVgg-nrAVVLAR 82  Acidimicrobium ...
ZP_05780101    5 LHLTVTTPMEVLVDatdvrSVRAEDAsGAFGILPGRADFLTSLpASVLRWRdagGALHFCALRAGLLTVrhgthVAVACR 84  Citricella sp. ...
ZP_09189487    1 MKLKIITPLAIIVEee-idSLRAEDAsGSFGILKSHAPFLTSLsLSILSWRv-sTTEQFCAVRGGVLTVak-ggAIEITT 77  Halomonas boliv...
EIF71937       5 LRVTIATPARVCVDdlpivSLRAEDAsGAFGIRAGHVDFVTLLrASVVRWRtadGATHYAAFDGGVLRVtrgarIEIACR 84  Burkholderia ps...
Feature 1        # #  ## #      #                   ## ##  # #  
2JDI_H        96 EAVTLDMlDLGAAKANLEKAQsellg--aadeaTRAEIQIRIEANEA 140 cattle
2XND_H        82 EAVTLDMlDLGAAKANLEKAQsellg--aadeaTRAEIQIRIEANEA 126 cattle
CAJ71318      83 EVFENDNaEELAEIIETNLAKrdk------semAFREMFEGIERSFM 123 Candidatus Kuenenia stuttgartiensis
ZP_01444248   85 DAILGEDiHALEDRIAAFRRDqdd------agrRERVEQMRLHANAV 125 Roseovarius sp. HTCC2601
YP_002731459  81 TAVKGESvEEIKEELSKRISRiev------fekKLRENIQILERMIM 121 Persephonella marina EX-H1
YP_002799152  84 EGIVGERlEQLEAQVREARETrrd------sarRARVEHLRLHTQAV 124 Azotobacter vinelandii AvOP
YP_003110381  83 AAEFVGDiDQASLESRRRVVAelasd---vderFVAPYRAGLELRES 126 Acidimicrobium ferrooxidans DSM 10331
ZP_05780101   85 EGILGDDlAALTAKVASLRSDead------adrRARVEQLRLHSQAV 125 Citricella sp. SE45
ZP_09189487   78 REAVIGNdLATLGADVLARFEaeaeeekvehveSMRLQVNAIRQMIS 124 Halomonas boliviensis LC1
EIF71937      85 DAVLGESlAELEAVVRGVRATqld------ekrRARVDETRLHAQAV 125 Burkholderia pseudomallei 354e

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