1VDX,5LDI,1IUH,2D4G


Conserved Protein Domain Family
ThpR

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COG1514: ThpR 
RNA 2',3'-cyclic phosphodiesterase (2'-5' RNA ligase) [Translation, ribosomal structure and biogenesis]
Statistics
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PSSM-Id: 441123
Aligned: 913 rows
Threshold Bit Score: 43.0936
Created: 9-Feb-2022
Updated: 24-Feb-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1VDX_A         1 M---------RAFIAIDV-N-ESVRDSLVRAQD-YIgSKEaKI----KFVEr-ENLHITLkFL-----G-E-IT-----E 51 
WP_075792319  20 Lggg---ldpRRGMTLIArPdPALAARLEHVQD-RL-A---GAdp-rQYRQprADLHVTIlSLf------T-VT-----E 78 
WP_012464635   1 Mdlke-ekkeRFFFAFWP-D-SQRQSLLGRLRE-EL-FAGiQA----RAIPp-EFLHLTVlFL-----G-W-TS-----P 58 
WP_014018265  29 Lnnp---kdhRRGLTLLLrPnPRLIEALNQFIF-EG-K---SLfp-nQYFYppTDLHLTImPIiscyeGfS-LD-----N 93 
WP_013073303  31 Iynp---edlRRGITLLArPdKKVSSQIHTILQ-EI-K---GIep-lQYAYppDDFHITImSIiscysGfH-LD-----K 95 
WP_059059831   1 M---------NILLSADL-P-HSIQPRLASLCf-GL-Q---QV----QWLEe-GDFYLNLrSF-----G-K-LS-----P 47 
WP_127025668   1 MpenratlddRCFLSLKF-S-PAQQRLLHTYQQpGLw---pDA----KWHSv-DNLHLTLvFL-----G-Q-QA-----V 58 
WP_046311425  29 Ldsa---sdnRLGITLLLrPdSQVQNNIQAFLS-DL-K---AIdp-aQYYYpnSDIHVTVmSIiscysGfD-LA-----Q 93 
WP_062543592  29 Ldsp---tdtRRGITLLArPrGEVLENIQCFLQ-EM-V---TLep-eQYYYptSDVHLTIlSIiscypGfS-EA-----D 93 
WP_013020764  22 idtppydggsRYGISAVLrPtGELARELERWGE-DI-A---AIagpgHWLLgaGAVHTTLrALe------PhSTrsfdgD 90 
1VDX_A        52 E---QAE---EI-KNIL-KKIAEKYKKHEVKVKGI-GVFPnpnyIRVIWA-GIE-N-DEIIREMAREIEDE-LAKLGF-- 116
WP_075792319  79 DyapHLArraGY-TAAV-RAAVDGLPAFDIDFDGI-TISRg-----AVLArGf--PrDGTLELLRTRLRDA-LRArGLdg 147
WP_012464635  59 R---SIE---EI-VKELpGR--LKTEGFPLFFQFSkAVFKrrgkEGIIWLeAVR-V-PPPAERLLQDLIQL-MTQKKL-- 124
WP_014018265  94 l---DLS---TY-DQLI-KNSLKGICKFEIRFEGV-FASPs-----CLMVkGf--PlDENLMNLRQNLRKS-FATsNVeq 156
WP_013073303  96 i---NTQ---DY-ISVI-RKSLSTIHNFRIHLKGI-SLNPs-----GILVnGy--PeDDTLEILRNSLREH-FKQtDLtq 158
WP_059059831  48 N---ELD---AI-RIRL-KY--LFFHPLPMTLEGI-GHHHqrsnRGMIWA-GIK-R-SLPLEQLKKEIDHL-LK--DL-- 108
WP_127025668  59 T---AQQ---ELwSKSL--ELLHEHPPVELCFDQY-HQFSk---AKILYL-GVSnP-DSALMALQQQLQQLaL-PY-Lh- 121
WP_046311425  94 i---SVP---EY-VELV-RKSIPAQVSIRIKFRGI-TASPs-----TVMVqGf--MeDDTLNELRNNLRVN-FRNsALeq 156
WP_062543592  94 i---QLQ---PY-IELV-KEALASIQPFRVMFKGI-TASPs-----CVLLqGf--PySDDLHQLRGNLRTA-FRDcRLqq 156
WP_013020764  91 E---RFV---DY-VAAL-DEAVSGFPPVELELRGF-GPHPg-----GVVVyGh--CgAETLPALRRRYVEA-LDArAVvh 153
1VDX_A       117 K--KE-G-NF---VA-HITLGRVKFV-Kd----kLGLT---MKLkelan-edfgSFVVDAIELK--KstltpkGP-IYET 176
WP_075792319 148 M--LD-Qr-YrlvTA-HSTLLRFIAPpAg-----PARFaavLAElrgm---plgTMHVDTPQLVvnDwy---msSaAVES 211
WP_012464635 125 S--FQaHsPF---VP-HITIFRHVLP-Qs-----LPEN---LAKrkeielpapfELGVDTLYLV--RselkaeGS-DYKK 186
WP_014018265 157 S--LD-Kr-YklvAA-HSTLVRFTKPiEe-----KEKVialIDAyknf---nfgTQYFDQVEFVynDwyq--reS-IVRT 220
WP_013073303 159 S--LD-Kr-YtikTA-HSTILRFQNRlQy-----PDELiefIEKhrdt---efgTFHVKNIALVfnDwyq--ktE-NTKL 222
WP_059059831 109 S--LP-SeAP---SQlMVPLGYYERL-Npd---kLNDY---LIDrahf---qsqPFEIQSCSLR--LmratpkRM-FFER 169
WP_127025668 122 ApvPE-PeHF---VP-HVTLARKFQS-AamfpqpAPp----L------------ELLCTEVALY--HsvssvlGV-SYQS 176
WP_046311425 157 S--ID-Kr-YaiqTA-HTTVVRFRQEiTq-----VQEYvkvLEKyreh---dfgTFTADELVLVynDwyq--rrA-HVQD 220
WP_062543592 157 S--ID-Qr-YaisTA-HSTVIRFREPlQr-----PDKFlqkLREyrah---dfgTAVIDQVELVsnDwyq--rqE-NTRL 220
WP_013020764 154 H--EA-Gm-Vr-dLW-YCSLVQfAAPvTd-----VAALlawGEAnrdr---fvgTAVYREVDILrwRlr---gGRlVTET 216
1VDX_A       177 LARFe----L--SE 184
WP_075792319 212 IEAFp----L--RR 219
WP_012464635 187 VFSFp----L--AQ 194
WP_014018265 221 LHTYp----L--P- 227
WP_013073303 223 LKTFi----L---- 228
WP_059059831 170 LEQYsaspqIs--G 181
WP_127025668 177 VYSYt----LvpKg 186
WP_046311425 221 LHRFk----F--G- 227
WP_062543592 221 LATFp----L--T- 227
WP_013020764 217 LHTAk----L--DG 224
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