Conserved Protein Domain Family
IS66_TnpB
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NF033819: IS66_TnpB 
IS66 family insertion sequence element accessory protein TnpB
The IS66 family insertion sequence element encodes a DDE transposase TnpC, and two accessory proteins, TnpA and TnpB. It has been assumed that the TnpA, TnpB, and TnpC proteins are produced independently in appropriate amounts and form a complex, which acts as a transposase to promote the transposition of an IS66 family element.
Links
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Statistics
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PSSM-Id: 411392
Aligned: 63 rows
Threshold Bit Score: 108.339
Created: 24-Apr-2023
Updated: 3-May-2023
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
WP_009960173  10 VHLLAGATDMRLGFEGLLALASGLLREDPLSGHLFVFCNKHRTRLKALYWDGSGLWVCAKRLEKGRFHWPqPPAQgaSrK 89  Verrucomicrobiu...
WP_011108244   3 YFLCPGKTDMRKGMNSLCGVVHDKMGYDVRLGDVFIFINRQRTTMKLLHAEDGGLVLYIKRLEEGTFRLPsYDKE--SkS 80  eubacteria
WP_004312010  10 YYLYPYPTDMRKSFYTLSGIVTNQMGKNVRDGDAFIFINANCTCMKILHMEYGGLVIYHMRLEHGHFHLP-VINTeeGrI 88  eubacteria
WP_091910086  10 YWLYPFPTDMRKGFYTLSGLVTEGMGQDVRSGDVFIFLNRHCTSMKALHMEHGGLVIYYMKLEKGNFALPpLDEK--GkT 87  unclassified Po...
WP_012477958  10 VYLHREPIDFRAGINSLAVLVQEVMELDPFAPSVFAFCNRRRDRVKLLFFDRSGFVMVLKKLTEDRFRWP-RRET--A-V 85  Hyphomicrobiales
WP_028755356  10 VYLHRDPIDFRAGINSLAILVEQSMGLSPFERAVFVFCNRRRTRMKLLFFERSGFVLVLKALSEDRFRWP-RREA--P-V 85  Rhizobium
WP_041205730  15 IYLYRAPIDFRKQAHGLAALVEQQLGHNPFTGALYAFTNRRRNKIKCLMWEDNGFVLYYKALAEEKFKWPsSADE----L 90  Gammaproteobact...
WP_011629278  10 VYLCREPVDMRKSIDGLSLLVQEAMALNPFEQAVFVFCNRQRDKVKILAWERNGFVLWYKRLEQERFKWP-DRLQ--GdT 86  Alkalilimnicola...
WP_009687920  11 VYLYPKPVDFRKSIDGLTALVELDIKVAVFDPVLFVFLNKARNRIKVLYWERNGFCLWLKRLEAERFKTS-PDAT--DeA 87  Pseudomonas
WP_014610304  10 IWLCTTPVDMRKSFNGLSALVRNKLCHNPQSGQYFVFINARKTQMKVLYFESSGYCVWAKRLEQGQFPVK-PHPS--G-I 85  Gammaproteobact...

WP_009960173  90 VVLT--QAELTLLLAG 103 Verrucomicrobium spinosum
WP_011108244  81 YPMQ--WRDLVLMVEG 94  eubacteria
WP_004312010  89 KAIEtfWNDLVMMVQG 104 eubacteria
WP_091910086  88 HPFS--WQKLMLMVQG 101 unclassified Porphyromonadaceae
WP_012477958  86 VTLT--TEQLHWILDG 99  Hyphomicrobiales
WP_028755356  86 VMLD--TEQLRWLLDG 99  Rhizobium
WP_041205730  91 LSLS--SEQINWLLDG 104 Gammaproteobacteria
WP_011629278  87 LTLS--GQELNWLLDG 100 Alkalilimnicola ehrlichii
WP_009687920  88 IVLT--VQELNWLLDG 101 Pseudomonas
WP_014610304  86 QSLT--GCTLQMIVDG 99  Gammaproteobacteria
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