Conserved Protein Domain Family
lipocalin_10-like

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cd19425: lipocalin_10-like 
Epididymal-specific lipocalin-10 and similar proteins
Epididymal-specific lipocalin-10 (LCN10) may play a role in male fertility, and may act as a retinoid carrier protein within the epididymis. It belongs to the lipocalin/cytosolic fatty-acid binding protein family which has a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.
Statistics
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PSSM-Id: 381200
Aligned: 4 rows
Threshold Bit Score: 163.207
Created: 7-Jan-2013
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
ligand binding
Feature 1:ligand binding cavity [chemical binding site]
Evidence:
  • Comment:hydrophobic cavity binds different hydrophobic ligands; ligands are bound within the beta-barrel in a central internal water-filled cavity lined with polar and hydrophobic amino acids
  • Comment:based on lipocalin/cytosolic fatty-acid binding protein family members with structure

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #   #                       # #       # # #            # # #        # #     
Q6JVE6     36 NWNKFSGFWYILATATDAQGFLPARDKRKLGASVVKVNKVGQLRVLLAFRRGQGCG--RAQPRHPgtsghlWASLsvKGV 113 human
AAQ81976   36 NWNKFSGFWYILATATDAQGFLPARDKRKLGASVVKVNKVGQLRVLLAFRRGQGCG--RAQPRHPgtsghlWASLsvKGV 113 human
ELK07385  198 LGSLGSGFWYILAVASDAQGFLPGRDKRKLGASVVQIHRVGQLKVVFAFTRQSTSS--FLSLKKFvd---iCEVL--ELT 270 black flying fox
Q810Z1     31 NWSKFSGFWYIIAIATDTQGFLPARDKRKLGASVVKVHKTGQLRVVIAFSRPRGCQsrEVTLKKDrkrpvfRNTL--KGV 108 house mouse
Feature 1     # # #        # # #         # # #   
Q6JVE6    114 KAFHVLSTDysyGLVYLRLGratqnyKNLLLFHRQ 148 human
AAQ81976  114 KAFHVLSTDysyGLVYLRLGratqnyKNLLLFHRQ 148 human
ELK07385  271 RGMTVLPKDg--NVALGRHGfr---sRLSHSRADT 300 black flying fox
Q810Z1    109 KGFHVLSTDytyGLVYLRLGrggsnyKSLLLFNRQ 143 house mouse

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