Conserved Protein Domain Family
Sig70_famx3
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TIGR02954: Sig70_famx3 
RNA polymerase sigma-70 factor, TIGR02954 family
This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in certain Bacillus and Clostridium species.
Links
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Statistics
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PSSM-Id: 213752
Aligned: 6 rows
Threshold Bit Score: 234.219
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
AAO35293        1 MYDVLLVKRAIRGNKDAFTSLIKQCKNELYKIAYIYTKNEDDALEAIDESIYKAYISINTLNNPEFFKTWIIRILINECI 80  Clostridium te...
BAB80265       18 LNEIRLIKESMKGNKESFGILIKNNKEYLYKMAFLYVKDEQDALEVIHETVYRAFLNIEKLKKAKFFNTWITRILINVSI 97  Clostridium pe...
BAD66582        1 MTDEELARKAISGNVAAFESLLMAHYEKLYYTAMKYTNQHNDALDAIQEASCKAYLSIHKLNHPQYFMTWVTKILIRECY 80  Bacillus claus...
novoz:BL01923   1 MKQIRLVKKAVAGNAKAFEMLFQKHSEQLYRTAYIYVRNKEDALDIVQETAYKAFLSIAQLRNPEYFLTWLTKILIHHAY 80  Bacillus liche...
BAB04339        1 --MLPMVSLFKRLSRPPFEELVEKEKDKLYRVAFTYVRNEHDALDVVQEAVVKGYEAYDRIKHLDYFSSWMTRIVINTAI 78  Bacillus halod...
WP_011948534    1 MNTEELAIKAKSGDENAFCKLIKINKEVLYKTAFYYTKNEHDSLEILDDTVYKAYKSIKKLKQEKYFNTWLMRILINSCI 80  Clostridium bo...

AAO35293       81 TLLKKKNKIVLENNNTKFE-IQCNDDYDSKFefeDLYKAINTLNDKQRTAIILKYFQDLKISEISDVMQISDNTVKSHIR 159 Clostridium te...
BAB80265       98 DFLKKKGKNEMLDESTPIRkERCEISTEEKL---DLYNAIDLLNDNYKTVIIMMYFNDMKIKDISKVMEIPENTVKTYLR 174 Clostridium pe...
BAD66582       81 QLLQKQKKMIPFEDADLFKkLEGHQEAPAHAs--TLSAALLDLDQKYQSAIILHYYHDLPIKEVAEIMKKPQSTIKSYLL 158 Bacillus claus...
novoz:BL01923  81 AILDKKKKVVLMDRPLQDEgREQEMHADDRI---GMLEAVQQLRKEYQTAIILFYYHDLPIHDIAEVMNAPEGTVKTYLK 157 Bacillus liche...
BAB04339       79 DLLRKGKDVIPFCPEKSQMnGWTETHIISRL---DLFDVLSELKPEETTLLVLRYYHDFTILEIARFMNKPEGTIKAQLH 155 Bacillus halod...
WP_011948534   81 THINKRKRLIFFRKNIDITeKHESVDNREELl--DLYKAIDTLEDKFKMIIILRYFNDLTVPQIADIMDYPIGTVKTYIH 158 Clostridium bo...

AAO35293      160 RGILSLKKSLKE 171 Clostridium tetani E88
BAB80265      175 RAKQALGEVLKE 186 Clostridium perfringens str. 13
BAD66582      159 RGRKRMKAYFER 170 Bacillus clausii KSM-K16
novoz:BL01923 158 RAKLELKQLLTG 169 Bacillus licheniformis DSM 13 = ATCC 14580
BAB04339      156 RTLAKVRKRMEK 167 Bacillus halodurans C-125
WP_011948534  159 KALKQLRIELEV 170 Clostridium botulinum
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