Conserved Protein Domain Family
LSm8

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cd01727: LSm8 
Like-Sm protein 8
The eukaryotic LSm proteins (LSm2-8 or LSm1-7) assemble into a hetero-heptameric ring around the 3'-terminus uridylation tag of the gamma-methyl triphosphate (gamma-m-P3) capped U6 snRNA. LSm2-8 form the core of the snRNP particle that, in turn, assembles with other components onto the pre-mRNA to form the spliceosome which is responsible for the excision of introns and the ligation of exons. LSm1-7 is involved in recognition of the 3' uridylation tag and recruitment of the decapping machinery. LSm657 is believed to be an assembly intermediate for both the LSm1-7 and LSm2-8 rings. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet.
Statistics
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PSSM-Id: 212474
Aligned: 69 rows
Threshold Bit Score: 81.0328
Created: 10-May-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:putative RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:Residues within loops 3 and 5 of the SM1 motif bind RNA

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                     # #                             #                  
O95777         2 TSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVfsssqgvEQVVLGLYIVRGDNVAVIGEIDEETDSAL 81  human
EGA74252      21 SATLKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFNRIs------KEFICKAQLLRGSEIALVGLIDAENDDSL 94  Saccharomyces c...
XP_001913674   1 MSLVKEYINKKVEVVTTLGKVYIGILTGYDNFMNIVLKNSIERTfsk-egvSNISCGLLILRGDEIMVIGGLNEEKDTQL 79  Entamoeba histo...
XP_001645784   2 SPLLKDYLNKKIVIITTEGRCLLATLEGFDKNTNLVLSQVHDRFg-----sSGVVQAVQLLRGSEVVSCGLLDDGYDEAD 76  Vanderwaltozyma...
XP_002551852   2 SPLLKDFLNKRIVVVTTDGQCVKAMLEGFDKSTNLLLSDVRDRVs------GDVVASSYLVRGNQVVCCGLLEEESSPQP 75  Lachancea therm...
CCF58352       2 SPLLKEYLNKKVVIVTTEGQCVIGTLEGFDKSTNLLLSSVYERFak----pEDITSQVQILRGSEVVLCGLYDDKADLFG 77  Kazachstania af...
XP_002498487   2 SPLLKDYLHRRVLVITTAGDCIVATLEGFDKNTNVVISDVVDRCt------LRPMAMAQAVRGSEIVAMGPIDDAPTGTV 75  Zygosaccharomyc...
XP_003676112  26 SPLLKEYLNKKVVIITVEGQCFTANLEGFDKNTNLMLSNVRDRFn------HELITSVQLLRGSEVVVCGLLEEIEEGKK 99  Naumovozyma cas...
XP_003683535   2 SPLLKDYLNRRITIVTTEGRCIIAKLEGYDKNTNLVLSSVVDYFas---aaDDKGISIQMLRGSEVVICGLLEDDLENND 78  Tetrapisispora ...
XP_003669211   2 SPLLKDYLNKKIVIITVEGSCYLAMLEGYDKYTNLIVSDVRNRFd------DKLISQFQMLRGSEIVTCGLIEEETKETD 75  Naumovozyma dai...
Feature 1                   
O95777        82 DLGNIRAEPLN 92  human
EGA74252      95 APIDEKKVPML 105 Saccharomyces cerevisiae AWRI796
XP_001913674  80 DWQCVVSNPLS 90  Entamoeba histolytica HM-1:IMSS
XP_001645784  77 DLSNESVTPLK 87  Vanderwaltozyma polyspora DSM 70294
XP_002551852  76 DFGAESVSAQL 86  Lachancea thermotolerans CBS 6340
CCF58352      78 GTGGNVPSLKD 88  Kazachstania africana CBS 2517
XP_002498487  76 DPLKDTKNKIP 86  Zygosaccharomyces rouxii CBS 732
XP_003676112 100 DVEDSGVIIPM 110 Naumovozyma castellii CBS 4309
XP_003683535  79 NEEEAVHENKK 89  Tetrapisispora phaffii CBS 4417
XP_003669211  76 EKEEFNKEATK 86  Naumovozyma dairenensis CBS 421

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