6THM


Conserved Protein Domain Family
Ldi

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pfam18566: Ldi 
Linalool dehydratase/isomerase
This (alpha,alpha)6 barrel fold domain is found in linalool dehydratase/isomerase (Ldi) EC:4.2.1.127. An enzyme found in the betaproteobacterium Castellaniella defragrans 65Phen that mineralizes monoterpenes coupled to anaerobic denitrification. The periplasmic enzyme reversibly catalyzes the isomerization from the primary alkenol geraniol into the tertiary alkenol (S)-linalool and its dehydration to beta-myrcene. Each monomer is built up of a classical (alpha,alpha)6 barrel fold composed of six inner helices. Structural data of Ldi revealed the terpene binding site between two monomers inside a hydrophobic channel, and three catalytic clusters involved in catalysis.
Statistics
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PSSM-Id: 465804
Aligned: 51 rows
Threshold Bit Score: 264.875
Created: 27-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6THM_C              65 KYSIAFYAYGLASVALID-PKLRALAGHDLDIAVSKMKCKRVWGDWEEDGFG-------TDPI-EKENIAYKGHLNLMYG 135 Castellan...
zhongguo:AS9A_2751 228 RYQLNFVSYTAAMYQYTCaPAFTGYAAEAQRNMIDKMLQKPVWSYWSLEHLWgnl-rwnPDPI-IDDNVMYSGYLGLMLG 305
WP_012836219        33 RYQLSYACYALSLAQYTRtPAFGGYLAEAQANLIRKMCDKRVWGYWATERLAgyl-rwnPDPM-VFANVMYTGFFAAMLA 110 Gordonia ...
WP_056706769       223 RYQLNALSYGLSMSQFTRtPAFRGYLAEAQRNTIDKMLQRRVWGYWPLENAWgnl-rrdKEPIpVGQNVMLTGFFGLQVG 301 unclassif...
ETD32478           200 RYQLCVLGYALSMYRYTRtPSFSGYLAEAQEQSILKMGDKRVWGYWALENAWgrm-sfgRDPVnNHDNVMLTAWQGAAVG 278
KIQ17033            49 RYQLSILGYALSMYRYTHtPAFSGYLAEAQRNAVVKMGDRRVWGYWPLENAWgrf-slgRDPVrNRDNVMLTGWQGAAVG 127
WP_013830748       222 RYQCNFMQYALATAQLHAtPSFHGYLSAAQRNLIDKLTLPAVWRYWAFEQTWgnl-sldWDPM-KRDNIMLSGYLGMMLG 299 Mycolicib...
MSJTU:JDM601_3820  187 RYQINHAQYALAQVQRHYtPNFHGYLSEAQERLIEKLTVPKVWKYWRLERLWgrl-stnYDPA-GFENIMLTGWSGICLN 264
Q2G5D2             221 RYQINHMGFALGIAQRAYlPAFRGYMGLAQRNLIEKYLERKVWDYWVLESCWghlnftdWNPA-ARDNIMLTGWFAAHVG 299 Novosphin...
N6Z5E2             219 RYQLNHIGFALGMVQGHYtPNFQGYLGQAQRNVIDTYRERKVWGYWVYESMWghfnfsdFDPA-RKDNIMLTGWYGMHVG 297 Thauera l...
6THM_C             136 LYQLVTGSRRYE-----------------AEHAHLTRIIHDEIAANPFAGIVCEPDNYFVQCNSVAYLSLWVYDRLHGTD 198 Castellan...
zhongguo:AS9A_2751 306 MYETMTGDRRYHepgclelr-wndttiyrHDADTITAALVDNFSRARLGQFPCEPNWIYPMCNTFGINSLLVYDRLEGTN 384
WP_012836219       111 MYETMNDDRGFDddgslplv-wsrrqtydYGFTRIAQAIETNMRASSQTMYPCEPHLIYPMCNTIALAGLTGYDRLHQTD 189 Gordonia ...
WP_056706769       302 MYTAL-NDDRYTrpgsltfr-wdestvfpHDLPGLAANVRASVSGSPFSLYPCEPNWIYTICNTFGLNTVLAAEQQTPTG 379 unclassif...
ETD32478           279 MYES-FGDSRFSrpggltyt-wsdqqryrHDFHDLAESIHRNMRRSPYTLFSCEPRWIYPVCNTFGINTLIAHDRLHGTG 356
KIQ17033           128 MYES-FGDDRFSrpgglsyv-wsddvrydHDFPALAASIHRNMTASPFTLFSCEPRWIYPVCNAFGVITMQLSDRLHGTE 205
WP_013830748       300 AYESNTGDDRYRrsgalpfr--lgkrdwpYTHDMVSAAVHDNMQRSGMTLFPCEPNWIYSACNMPAISSLMMSDRLHGTR 377 Mycolicib...
MSJTU:JDM601_3820  265 TYSTNTGSDRFVgpgslefslgdpnktyhHDAHSFNESLMWNFGRSPQTVFACEPNWTYSACNLYGLNSVASYDAAFGTR 344
Q2G5D2             300 QYMLATGDRRYMepgsltfr-lnrrqswaHDFTTIVGSVSDNYARADFGLFACEPNWIYPICNHYGMLALVTHDALTGSK 378 Novosphin...
N6Z5E2             298 QYMLNAGDTRYSqpgslsfr-lndktcyhHDIHSINQSVRENFQSSDFCLYPCEPNWVYPVCNMYGMSSLAVYDTLFERR 376 Thauera l...
6THM_C             199 YRA-----ATRAWLDFiQkdLIDpERGAFYLSYHPESGAVKPW-ISAYTTAWTLAMVHG-MDPAFSERYYPRFKQ---TF 268 Castellan...
zhongguo:AS9A_2751 385 HAEpvvaqVRESYDNG-D--FCE-PDGRLTAARSEYFGFRHPM-VGNMGDTITTYFLNP-IVPEIGRRTWWLMGK---NH 455
WP_012836219       190 LTDdlldkTRDSLNHN-G--YRL-RNGRFL-FGRGPLGLMMPP--MLANDAVMTYWLNG-IMPDMAAETWESLRT---NR 258 Gordonia ...
WP_056706769       380 AAEvvrsqLRTAYES--E--FLR-PDGRIVGVRSAHLGLSWNFwASPSVQLATTYWLNP-GMPDLAQRTWWLIRD---GW 450 unclassif...
ETD32478           357 FHAdlddaIARAYES--E--FTR-PDGKLIGVRNETLGLSWNIwASDGVSLPTIYWMNA-FLPDQAQRSWWLTKR---DS 427
KIQ17033           206 YVAdlqddIHRSYEM--E--FQR-PDGRSIGVRNETLGMSWNIwAGQGVTLPTTYWLGA-FAPDLSHRSWWLTRR---DA 276
WP_013830748       378 YIEsvgedFRRRLHG--E--FIT-PDGRITAIRSSRLGVTIPMlTSTMADCGLASMLHA-FDPELAQRCWTIARR---EF 448 Mycolicib...
MSJTU:JDM601_3820  345 HLDalrepFLRGLREE----LMT-PGGEIVPFRSDYTGISIPF-GGDVMYFQAAGWIAPvY-PDVARTLWAIACR---EV 414
Q2G5D2             379 LVDrhlpgWIRGLDT--E--FTD-ASGSIVGLRSQFTGLPVPF---PVGEAGYSHFANC-FMPDRARQFWAIARReiePL 449 Novosphin...
N6Z5E2             377 DTAqvlpkWLHMLDT--E--FTD-QKGSLVGLRSYWTGLEMPF---YTGEAGFAFFANI-FSTDLARKLWAVGRKelsMC 447 Thauera l...
6THM_C             269 VEvyDEGRKARVRETAGT----DDadgGVGLASA------FT-LLL-AREMGDQQLFDQLLNHLEPPAKPS-IVSASLRY 335 Castellan...
zhongguo:AS9A_2751 456 L---GAEGKGPKHRSW------NLidpGNYGINTdrfvraSL-AAN-AREYGDEFHAQQMEQSLAHRIVEK---DGARRY 521
WP_012836219       259 LR--IRNGDVALRTGPI-----DHldvGSYHLGVaw---aWVnVLCaAKEMGDDEVAQGVSAHIRSETGFErSPEGAHRL 328 Gordonia ...
WP_056706769       451 LR--VEDGRVSTPRSVV-----SRldpGNYKLGTdtftlaVT-TMA-AREIGDEETALAAEATLTEREQVE-ERYGAERV 520 unclassif...
ETD32478           428 LE--FDGDHFRLPRTAA-----NRcdvGNYSFGSdsfaqtFL-SLT-AREMGDIEIADKAFAYVDAREHVE-RVAGVARY 497
KIQ17033           277 LT--HDGHHYRLPRSAA-----TRcdaGDYSFGSdafahvFL-ALT-AREVGDIEVADDALDYVDSVGRRS-DQDGVARY 346
WP_013830748       449 IDt-TGPEPVIVLRGW------DAidtGNYRKTTlg--avAP-VMWaAAEMGDTDLVAQLTTTLERHAQPT-ETGGARWY 517 Mycolicib...
MSJTU:JDM601_3820  415 LDihNGGLEAYLAKPFMld-------sGNYRSTGmya-rgVI-LLA-AREFGDQQIADAAQRALDAYNEPV-AQDGMRRY 483
Q2G5D2             450 IVa-EDDGGSRIAMPG------AGldaGHYKPGHvga-yaSY-LVA-AREFGDRERADAALRGLERDCRPD-RSDGVLRY 518 Novosphin...
N6Z5E2             448 LTq-DAEGQTRLTLPKEAlaffDTidaGNYRPGKlfa-yvAV-QMC-AREFGDDELAEAARRSMDQDCGPV-VENGVARY 522 Thauera l...
6THM_C             336 EHPGSL 341 Castellaniella defragrans 65Phen
zhongguo:AS9A_2751 522 KRLSVW 527
WP_012836219       329 AGVSTW 334 Gordonia bronchialis
WP_056706769       521 SNASGL 526 unclassified Nocardioides
ETD32478           498 DRMSTQ 503
KIQ17033           347 EGLSTQ 352
WP_013830748       518 AELSTN 523 Mycolicibacter sinensis
MSJTU:JDM601_3820  484 ANGSTF 489
Q2G5D2             519 LTGSNI 524 Novosphingobium aromaticivorans DSM 12444
N6Z5E2             523 TKGSTL 528 Thauera linaloolentis 47Lol = DSM 12138
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