3QD6,3QD6


Conserved Protein Domain Family
TNFRSF5

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cd13407: TNFRSF5 
Click on image for an interactive view with Cn3D
Tumor necrosis factor receptor superfamily member 5 (TNFRSF5), also known as CD40
TNFRSF5 (commonly known as CD40 and also as CDW40, p50, Bp50) is widely expressed in diverse cell types including B lymphocytes, dendritic cells, platelets, monocytes, endothelial cells, and fibroblasts. It is essential in mediating a wide variety of immune and inflammatory responses, including T cell-dependent immunoglobulin class switching, memory B cell development, and germinal center formation. Its natural immunomodulating ligand is CD40L, and a primary defect in the CD40/CD40L system is associated with X-linked hyper-IgM (XHIM) syndrome. It is also involved in tumorigenesis; CD40 expression is significantly higher in gastric carcinomas and it is associated with the lymphatic metastasis of cancer cells and their tumor node metastasis (TNM) classification. Upregulated levels of CD40/CD40L on B cells and T cells may play an important role in the immune pathogenesis of breast cancer. Consequently, the CD40/CD40L system serves as a link between tumorigenesis, atherosclerosis, and the immune system, and offers a potential target for drug therapy for related diseases, such as cancer, atherosclerosis, diabetes mellitus, and immunological rejection.
Statistics
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PSSM-Id: 276912
Aligned: 18 rows
Threshold Bit Score: 239.227
Created: 9-Nov-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
polypeptideCRD1CRD2CRD3CRD4
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:polypeptide ligand binding site [polypeptide binding site]
Evidence:
  • Comment:Unexpectedly, CD40 and CD154 are found in a 2:3 ratio in the crystal structure. Charge interaction plays an important role in the CD40-CD154 binding, and the mutations found in hyper-IgM patients could be mapped on the interaction interface.
  • Structure:3QD6: Human TNFRSF5 (CD40) binds CD40L (CD154) ligand; contacts at 4.0A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                ##      ## ####  # # #                  
3QD6_R         6 CREKQYlinsQCCSLCQPGQKLVSDCTef-tETECLPCGESEFLDTWNREtHCHQHKYCDPNlGLRVQQKGTSETDTICT 84  human
ABV03588      26 CSDKQYehkgRCCNRCQPGKKLASECNdt-eDSVCTPCENGQYQQSWTKErHCTPHEICEDNaGLIVKRHGNATHNTVCQ 104 chicken
P27512        26 CSDKQYlhdgQCCDLCQPGSRLTSHCTal-eKTQCHPCDSGEFSAQWNREiRCHQHRHCEPNqGLRVKKEGTAESDTVCT 104 house mouse
NP_001138688  23 CKNTEYlrdgKCCSLCSPGKKVSQECDaq-iDTVCENCRSGEFQDKWNREtSCHQHAYCDPNaGKKEVTKGTAERNVECL 101 western clawed ...
XP_002721245  26 CRENQYqvnnQCCNLCPPGERLENECVdg-tNTKCLPCSNGEFLDTWNREtRCHQHKYCDPNlGLQVQREGTSETDTTCT 104 rabbit
EHB05315      26 CRENQFllnnVCCDLCPPGEKLVDECTef-kTTQCLRCTKGEFLGAWNRErHCHVHRYCDPNlGLQVQKEGTLETDTTCF 104 naked mole-rat
XP_003500573  26 CDDKQYlfngRCCDLCQPGRRLESHCTda-iKTQCLLCDSGEFMNKWNKElRCYQHTHCESKeGLEVEKQGTADTDTICA 104 Chinese hamster
EMP28279      27 CTPEQYqhdgRCCSRCGPGDKVLSDCTas-kKTDCGACEAGHFQSSWTKErHCTPHKSCDLNtGLRTRSPGDTKRNAVCE 105 green seaturtle
XP_006260210  29 CSERQYvhegRCCNRCAPGEKVTAACSealeWSTCAPCEVGSFQAHWTKEnHCMPHRYCDPNvGLVVKTPGSEKQDVTCG 108 American alligator
ELK04258      26 CRENQYlinsQCCNLCPPGEKLVNECTet-aNTKCFPCSEGEFLGTWNNErHCHQHKYCDPNlGLLVQTNGTSKTDTTCM 104 black flying fox
Feature 1                      #                                                                 
3QD6_R        85 CEEGWHCTSeACESCVLHRsCSPGFGVKQiat-gvSDTICEPCPvGFFSNVSSAFEKCHpWTSCEtkdlvvqqaGTNKTD 163 human
ABV03588     105 CRAGMHCSDaSCQTCVENEpCKQGFGFVAamaearMTSPCEPCAeGTFSNVSSKTEPCHfWTSCEekglvvkvkGTNTSD 184 chicken
P27512       105 CKEGQHCTSkDCEACAQHTpCIPGFGVMEmat-etTDTVCHPCPvGFFSNQSSLFEKCYpWTSCEdknlevlqkGTSQTN 183 house mouse
NP_001138688 102 CQIDRHCSGpTCEICLKNTpCSPGNGVTQtat-stSDTQCSPCAeGTFSNTTSYNDPCIsWKSCGnees-elfpGNSTSD 179 western clawed ...
XP_002721245 105 CQEGQHCISdACDSCAPHSsCPVGFGVRQkat-evSDTICEPCPdGFFSNVSSAVESCHpWTSCAthnlvelqaGTNKTD 183 rabbit
EHB05315     105 CKEGQHCTSdACEHCDLHTsCGPGFGVRHigt-gtSDTICEPCPdGFFSNVSSAFEKCHpWTSCEnkqlvelraGTNVTD 183 naked mole-rat
XP_003500573 105 CKEGQHCTSeECQRCAQHTsCGPGFGVKQmat-rtADTVCEPCPaGFFSSGSSAFEQCHpWTSCEaknmvvqqeGTNRTD 183 Chinese hamster
EMP28279     106 CQQGMYCSSpDCQTCMNITnCKPGEGVARkad-nfSDTACVPCEhGSFSNTSSASEPCRpWTRCEtlglvlkttGTNLLD 184 green seaturtle
XP_006260210 109 CQVGMHCTSaQCQTCKLNPrCKPGFGVVPraq-edAPPTCQPCPdGSFSNVTSDSKPCQpWSRCEeqglvmkenGTRSSD 187 American alligator
ELK04258     105 CGKGQYCTSdACERCIPHRlCPPGFEVQQiat-gvSDTICKPCPvGFFSNVSSAFEKCHrWTSCEsknlvelqaGTNKTD 183 black flying fox
Feature 1           
3QD6_R       164 VVC 166 human
ABV03588     185 VIC 187 chicken
P27512       184 VIC 186 house mouse
NP_001138688 180 KVC 182 western clawed frog
XP_002721245 184 VRC 186 rabbit
EHB05315     184 AVC 186 naked mole-rat
XP_003500573 184 AVC 186 Chinese hamster
EMP28279     185 VAC 187 green seaturtle
XP_006260210 188 VVC 190 American alligator
ELK04258     184 AVC 186 black flying fox

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