1OSM,1PHO,2OMF,1E54


Conserved Protein Domain Family
gram_neg_porins

?
cd00342: gram_neg_porins 
Click on image for an interactive view with Cn3D
Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.
Statistics
?
PSSM-Id: 238208
Aligned: 191 rows
Threshold Bit Score: 73.9447
Created: 10-Jan-2006
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
trimereyelet of
Conserved site includes 39 residues -Click on image for an interactive view with Cn3D
Feature 1:trimer interface [polypeptide binding site]
Evidence:
  • Structure:1OSM; Klebsiella Osmoporin trimer (4A contacts)

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1       # #     # ###                                           #####     # ### # ####  
1OSM_A        9 NKLDLYGKIDGLHYFSDdkdvdg-----------------------dqtymRLGVKGETQINDQLTGYGQWEYNVQANnt 65  Klebsiella pneum...
CAA65772     22 ADTTLYGRMNLSVDIVDngddtth--------------------qlasnssRLGVRGSEDLGNGLRGVFQIEAALQGDsg 81  Ectothiorhodospi...
NP_901659    22 ADVTIYGFLSGGIESAKatgngnsakdy------------asrtrvvdensRIGFKGWEDLGGGTKAIWQVESSLRNFen 89  Chromobacterium ...
ZP_00151773  22 SNVTIYGVADATFDSVKatkgssaseqaa----------fvtrqrvtanssYIGFKGVEDLGNGLKAVFQFENGINNDns 91  Dechloromonas ar...
P20148       19 ADVTLYGAIKAGVQTYRsvehtdgkvskv-----------etgseiadfgsKIGFKGQEDLGNGLKAVWQLEQGASVAgt 87  Neisseria gonorr...
NP_901316    20 ADVNLYGSLRAGVSVTKnstnnysst-----------------fgvddfgsRIGFRGNEDLGNGLKTIWQVETGFAMDgv 82  Chromobacterium ...
NP_902774    19 ADVTIYGQIKAGVENVDaggvnkt--------------------nvddmgsRIGFKGSEDLGNGLKAIWQVESGFDIDgt 78  Chromobacterium ...
P30692       19 ADVTLYGQVKAGVEVSRtketvnhvstkn-----------ktateiadfgsRIGFKGHEHLSNNLNAIWQVEQNTSVAgt 87  Neisseria sicca
P18194       19 ADVSLYGEIKAGVEGRNfqlqlteppsksqpqvkvtkaksrirtkisdfgsFIGFKGSEDLGEGLKAVWQLEQDVSVAgg 98  Neisseria mening...
ZP_00024320 133 TNVTIYGRLNTAIEYSSaststngtslg-------------svvrqtnnrsVFGFRGEEDLGGSLKAVWQIESNLSIDtg 199 Wautersia metall...
Feature 1                    ## #####         ###                                               
1OSM_A       66 ess-----sdqawTRLAFAGLKFgdAGSFDYGRNYGVVYDVTSWTDvlpefggd----------------------tygs 118 Klebsiella pneum...
CAA65772     82 safg----ssnltGRNTYVGLAGa-FGEVRVGKHDTPYKLATLPLNffadtlgdmnhvtsqmggldkydgveglvasksg 156 Ectothiorhodospi...
NP_901659    90 ggtndkgqtasfgTRNTFIGIDNgdFGKVLLGQNDSAYKMFTGSGNsalgtdvmintta-------------dnfgassv 156 Chromobacterium ...
ZP_00151773  92 sa-------gswnNRDSYVGLSGg-FGTVVAGNLTGPTRAVGAKYDvnqgatgiganaall--------gklgtiagdsg 155 Dechloromonas ar...
P20148       88 nt--------gwgNKQSFVGLKGg-FGTIRAGSLNSPLKNTGANVNawesgkftgn-------------------vleis 139 Neisseria gonorr...
NP_901316    83 sgggt--asgtfaNRESYVGIDSs-YGKLRVGYLTDVLGDSEATDNlygprrdgmgtnf-------------plyeatdl 146 Chromobacterium ...
NP_902774    79 nrqg----ygtfaSRESFVGLDTg-YGKVRLGNISTFSDSNMSVVNpwesssnal---------------------qlna 132 Chromobacterium ...
P30692       88 dk--------gwgTRESFIGLEGg-FGKVRAGKLNTALKDNSDSVDpwessdanas-------------------vlqfg 139 Neisseria sicca
P18194       99 ga-------tqwgNRESFVGLAGe-FGTLRAGRVANQFDDASQAIDpwdsnndva---------------------sqlg 149 Neisseria mening...
ZP_00024320 200 qg--------qiaGRNSRIGLQGd-YGLFFMGHWTTPYTEATMGYDpyypttagymalign--------gstsssdnvqd 262 Wautersia metall...
Feature 1             # ##                                                                      
1OSM_A      119 dnflQSRANGVATYRNSdffglvdGLNFALQYQGkngsvsgegat------nngrgalkqngDGFGTSVTYDifdgISAG 192 Klebsiella pneum...
CAA65772    157 lgsfYNRNDNTLLYLSPnfdglqfMASYTTDKRDdrssg------------------iandaNAFSLAASFTqg-pMYVT 217 Ectothiorhodospi...
NP_901659   157 nsrgEARLANSIHWFSPnwagfklGASWGVDEARtng----------------------tdaKRISLGLGYTwg-aLNLA 213 Chromobacterium ...
ZP_00151773 156 asafDQRISNAVAYVSPtva-gftGVIGYSTGLSsaaiagtaaavigt-nreatgagdvqfnTARTLGLGYAn---GPIS 230 Dechloromonas ar...
P20148      140 gmaqREHRYLSVRYDSPefagfsgSVQYAPKDNSgs------------------------ngESYHVGLNYQns-gFFAQ 194 Neisseria gonorr...
NP_901316   147 fsygDSRYKNSVRYDSPtwngfnlTLQYGAGENAavgq--------------------mkqgEQYGARLAYQns-gFFGA 205 Chromobacterium ...
NP_902774   133 ftrdDVRVKNAVRFDTAnyngfqgAFLYGTKEDKtasfaga---------------psdssrELYNLGLSYEns-gFFGK 196 Chromobacterium ...
P30692      140 klkrVDERKVSVRYDSPvfagfsaSAQYQPRDNAnpedkhv---------------hdvktrHSFDLGLNYEns-gFFGR 203 Neisseria sicca
P18194      150 ifkrHDDMPVSVRYDSPdfsgfsgSVQFVPIQNSksaytpahytrqnntdvfvpavvgkpgsDVYYAGLNYKng-gFAGS 228 Neisseria mening...
ZP_00024320 263 tssfDRRQKNIVQYRSPslagvsvSLGWGLPEEKltvp---------------------rnpALYSMAAVYErg-pLNAT 320 Wautersia metall...
Feature 1                                                                                       
1OSM_A      193 FAYANSKrtddqnq--------------lllgegdHAETYTGGLKYDan-nIYLATQYTQTYnatrag------------ 245 Klebsiella pneum...
CAA65772    218 VAFEQLNdgsvlvdd-------------ngdavyaDAQAWKVGGTYQid-aLTLAAMYENVDs----------------- 266 Ectothiorhodospi...
NP_901659   214 TAWDKQYdkgvaantt-----------tasvnsgsNISFYSIAASYKfdsgTFIGGNYEWGNfdqvg------------- 269 Chromobacterium ...
ZP_00151773 231 VDYAYTRvglk--------------------daqnDLQDHRLGFLFSqg-wGSVGLLAERTSlqat-------------- 275 Dechloromonas ar...
P20148      195 YAGLFQRygegtkkieydd-----qtysipslfveKLQVHRLVGGYDnn-aLYVSVAAQQQDaklyga------------ 256 Neisseria gonorr...
NP_901316   206 WAYAGVLntk----------------------ggsNSSTNRLEGGYSan-nLYLAATYQWLTtygnasaqaknadgtlkv 262 Chromobacterium ...
NP_902774   197 YQYIHQTpvtia------------------gvrsqSNDSHRLEAGYNan-nLLVAFGYRNDRgdssitplsfl------- 250 Chromobacterium ...
P30692      204 YAGTFAKrkvlsddhlelf----nsnttlgsgvykDYQAHRLVGGYDan-nVLVSVAGQYEGfkadv------------- 265 Neisseria sicca
P18194      229 YAFKYARhanvgrdafelfllgstsdeakgtdplkNHQVHRLTGGYEeg-gLNLALAAQLDLsengd------------- 294 Neisseria mening...
ZP_00024320 321 VAYEIHQhyqa---------------------agrNDDALKFGIAYQlfqgTRLAAIYEHLHyrtd-------------- 365 Wautersia metall...
Feature 1                                                                                       
1OSM_A      246 -------------------slgfanKAQNFEVAAQYQFdf--gLRPSVAYLQSKgkdlngy------gdqdilKYVDVGA 298 Klebsiella pneum...
CAA65772    267 -------------------------GINGVGDRDAFHLgakyqLGQAYLMGSYTyagesd-------iddsdaQMYALGA 314 Ectothiorhodospi...
NP_901659   270 ---------------------ggqvKQDDWQIALGQDFga-asIKLAYGQLGALknvgagv-----ngndfkaKQWILGG 322 Chromobacterium ...
ZP_00151773 276 ---------------------tgnlTQNVFYVPVKVNVgkgrvIGQFGHAGNVKntva-----------segaNHYVLGY 323 Dechloromonas ar...
P20148      257 --------------------msgnsHNSQTEVAATAAYrf-gnVTPRVSYAHGFkgtvdsa------nhdntyDQVVVGA 309 Neisseria gonorr...
NP_901316   263 ddnkqpvyvipgikqlsptigsgtnKVENTGWAINAAYti-gnFKPSIVYSKRGdakidgv------ryslgaSQWAAAL 335 Chromobacterium ...
NP_902774   251 --------------qnnavpngdgsKYKSQEYALTAAYtl-gaFTPKITYAQAKdydkdgv-----svdntgyKQFLVGV 310 Chromobacterium ...
P30692      266 ---------------------adakKNERTEVAVTGGYrm-gnVMPRLSYAHGFkakengv-----kqgnsqyNQVIVGA 318 Neisseria sicca
P18194      295 ---------------------kaktKNSTTEIAATASYrf-gnAVPRISYAHGFdliergk-----kgentsyDQIIAGV 347 Neisseria mening...
ZP_00024320 366 ---------------------tgdlQRNAYYASLVQQVgt-gsVRAGVAYAANGtgsststigyfrsgaetgaIQFTVGY 423 Wautersia metall...
Feature 1          ##  #                                                # # #
1OSM_A      299 TYYFNKNMSTYVDYKINLLddnsft-----------------rsagisTDDVVALGLVYQF 342 Klebsiella pneumoniae
CAA65772    315 GYNLSRRTAVYAVFAQILNesgnesgatygfqg-sgkgkgfagadfgdNPAGFSVGVTHNF 374 Ectothiorhodospira shaposhnikovii
NP_901659   323 TYNLSKSTQLLAYATKITNnakasanfannpvydtnlgnkdasltagnSPQAFGIGMKVSF 383 Chromobacterium violaceum ATCC 12472
ZP_00151773 324 EHDLSKRTTLKLVYSQINNkegsnydylygagnanstatntsgvandaNVKGISLGLRHAF 384 Dechloromonas aromatica RCB
P20148      310 EYDFSKRTSALVSAGWLQGgkga----------------------dkiVSTASAVVLRHKF 348 Neisseria gonorrhoeae
NP_901316   336 DYTLSKRTMVQVGYGELKEnkdaqti----------------nqhakdTSSLAWAMMKHNF 380 Chromobacterium violaceum ATCC 12472
NP_902774   311 DYQMSKRTTVGLQYGEVKAdkaifnng-------------sdasstgnKLRGVGLNMVHSF 358 Chromobacterium violaceum ATCC 12472
P30692      319 DYDFSKRTSALVSAGWLKEgkgg----------------------dktQSTAGLVGLRHKF 357 Neisseria sicca
P18194      348 DYDFSKRTSAIVSGAWLKRntgi---------------------gnytQINAASVGLRHKF 387 Neisseria meningitidis serogroup C
ZP_00024320 424 DYPLSKRTALFAYYSRINNkknavydfai----------nqlgikagaDPQTVALGMRHFF 474 Wautersia metallidurans

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap