1LAG,1HSL,1LST,1LAF,1LAH,1HPB


Conserved Protein Domain Family
PBP2_HisJ_LAO

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cd13703: PBP2_HisJ_LAO 
Click on image for an interactive view with Cn3D
Substrate binding domain of ABC-type histidine- and lysine/arginine/ornithine transporters; the type 2 periplasmic-binding protein fold
This subgroup includes the periplasmic-binding proteins, HisJ and LAO, that serve as initial receptors in the ABC transport of histidine and lysine-arginine-ornithine amino acids. They are belong to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.
Statistics
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PSSM-Id: 270421
Aligned: 29 rows
Threshold Bit Score: 331.906
Created: 15-Mar-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ligand binding
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Structure:1LST; Salmonella typhimurium lysine/arginine/ornithine-binding protein in complex with lysine, contacts at 4 A.
  • Citation:PMID 8496186

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                #  #                                     #                # ##    #     
1LAG_E         3 PQTVRIGTDtTYAPFSSKDAkGEFIGFDIDLGNEMCKRMQVKCTWVASDFDALIPSLKAKKIDAIISsLSITDKRQqEIA 82  Salmonella typh...
1HSL_A         3 PQKIRIGTDpTYAPFESKNAqGELVGFDIDLAKELCKRINTQCTFVENPLDALIPSLKAKKIDAIMSsLSITEKRQqEIA 82  Escherichia col...
1LST_A         3 PQTVRIGTDtTYAPFSSKDAkGEFIGFDIDLGNEMCKRMQVKCTWVASDFDALIPSLKAKKIDAIISsLSITDKRQqEIA 82  Salmonella ente...
1HPB_P         3 PQKIRIGTDpTYAPFESKNAqGELVGFDIDLAKELCKRINTQCTFVENPLDALIPSLKAKKIDAIMSsLSITEKRQqEIA 82  Salmonella typh...
BAK76799      22 WTVIRFGIDpSYAPFESKAPdGKLVGFDIDIGNAICTKLKARCEWVENAWDGIIPALKAKKFDAILSsMSVTEKRQqQIA 101 Pseudogulbenkia...
ADX55466      20 ADTLRFGVEaDYPPFEYKLPsGELAGFDIDIGNAICAKLQVKCRWVENSFDGLIPALEARKFDAINSaMWATEQREkAID 99  Burkholderia sp...
EFQ62693      25 WKEIRFGVFpEYPPFESVAAdGSLQGFDIELGNAICAKLEVKCTWVHNEFDGMIPALRARKFDAIMSsMAVTPAREkQID 104 Pseudomonas flu...
EGD04237      25 SDIVRIGVDpNFPPFEFKSAdGRLTGLDIDLGNAICQDIGVKCEWVEHDFDHIIPGLNAKKFDIILSaMIATEDRRkVMD 104 Burkholderia sp...
YP_367141     27 AATLRFGTDpSYPPYEYKQPdGKLAGLDIDIGNAICAAANVQCVWVEISFDGLIAGLQSRKFDAINAsLAPTAARRaVMD 106 Burkholderia sp...
YP_002870625  26 RREIRFAVAaHFPPFQSRNPqGQLVGLNIELGNALCQQLNVRCTWVDQVLVENFKDLDALLFDAIIG-IAPTPQRQrWVS 104 Pseudomonas flu...
Feature 1                                          #  ###                                      # 
1LAG_E        83 FSDKLYAADSRLIAAkgspiqptleslkgkHVGVLQGSTQEAYANDNWrtkgvDVVAYAnQDLIYSDLTAGRLDAALQDe 162 Salmonella typh...
1HSL_A        83 FTDKLYAADSRLVVAknsdiqptvaslkgkRVGVLQGTTQETFGNEHWapkgiEIVSYQgQDNIYSDLTAGRIDAAFQDe 162 Escherichia col...
1LST_A        83 FSDKLYAADSRLIAAkgspiqptleslkgkHVGVLQGSTQEAYANDNWrtkgvDVVAYAnQDLIYSDLTAGRLDAALQDe 162 Salmonella ente...
1HPB_P        83 FTDKLYAADSRLVVAknsdiqptvaslkgkRVGVLQGTTQETFGNEHWapkgiEIVSYQgQDNIYSDLTAGRIDAAFQDe 162 Salmonella typh...
BAK76799     102 FSDKIYHTPTRLIARkgaalat-laslkgkRIGVEQGSTQEAYAKKYWepsnvTVVPYQnQDLVYQDLQSGRLDAALQDa 180 Pseudogulbenkia...
ADX55466     100 FTSVIYASPIRLVARtgshilpnaeslkgkRIGVQQGGTQQYYAEQKWapagaVVITYSsQTQVFSDLAAGRVDAALQSq 179 Burkholderia sp...
EFQ62693     105 FTDRLFLSPTSVITRkgadfgdtpeslkgkQVGVLQGSLQEAYARAHLaklgaQVKAYQsQDQNYADLQNGRLDATLTDk 184 Pseudomonas flu...
EGD04237     105 FSDTLYHIPVAMIAAttsglmptgdslrgkRLGVTKGTALEAYVKGKWgs-kaEVIAYPtDAQLYDALASGKIDAAIQDk 183 Burkholderia sp...
YP_367141    107 FTQPVYPADIRLVAArgshltpdvtslsgkRVGVLQGSTQAAFAKANWaphqvLVQEYPdQESIYADLVNGRLDATVVLg 186 Burkholderia sp...
YP_002870625 105 FTDNLYPFTTRLVARrssglmptpaslkgkRVGVLLGSNREAFAQSQWapkgvIIKRFWlNDELVRSLVAGDIDATLQGt 184 Pseudomonas flu...
Feature 1                                                                               
1LAG_E       163 vAASEGflkq-pagKEYAFAGPSVkdkk-yfgdGTGVGLRKDDtELKAAFDKALTELRqDGTYDKMAKKYF 231 Salmonella typhimurium
1HSL_A       163 vAASEGflkq-pvgKDYKFGGPAVkdek-lfgvGTGMGLRKEDnELREALNKAFAEMRaDGTYEKLAKKYF 231 Escherichia coli K12
1LST_A       163 vAASEGflkq-pagKEYAFAGPSVkdkk-yfgdGTGVGLRKDDtELKAAFDKALTELRqDGTYDKMAKKYF 231 Salmonella enterica subs...
1HPB_P       163 vAASEGflkq-pvgKDYKFGGPAVkdek-lfgvGTGMGLRKEDnELREALNKAFAEMRaDGTYEKLAKKYF 231 Salmonella typhimurium
BAK76799     181 vQADMGflkt-prgHDYAFVGPALndtq-tlgvGAAIGLRKEDqDLRQKINKAIADIHkDGTYQKIENKYF 249 Pseudogulbenkiania sp. NH8B
ADX55466     180 qSAEDSflkk-pegKDFAFVGEPLtdek-ifgrGVAFGVRKQDpELKARLNEAIAALKqDGTLNRLAKKYF 248 Burkholderia sp. CCGE1001
EFQ62693     185 lEAQLNflsk-pegADFKTGPAFKdpt---lplDIAMGLRKNDqELRDLINKGIAAVQaDGTYAQIQKKYF 251 Pseudomonas fluorescens WH6
EGD04237     184 aQAEYFfltk-pagQNFAFTGPDDfddarlkndDVAIGIRKDDaQLKDRINKAIADIRaNGLYRTISRKYI 253 Burkholderia sp. TJI49
YP_367141    187 sAAKLGflgk-pqgARFELAGPRIddpa-iqgaSSVIGVRKGDgRTRQALDAALTRLKqDGTINRLEKQYL 255 Burkholderia sp. 383
YP_002870625 185 -VEIRDalldtpagQDFDFLGPAVsael--lghGVAIGLRTTDtALRAELNRALEQLKhNGEYQRILAPYR 252 Pseudomonas fluorescens ...

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