Conserved Protein Domain Family
PRK13342

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PRK13342: PRK13342 
recombination factor protein RarA; Reviewed
Links
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Statistics
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PSSM-Id: 237355
Aligned: 850 rows
Threshold Bit Score: 460.321
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
170781157  14 PLAVRMRPRSLDEVTGQRHLLTPGSPLVSLasdVAGEQGsvSIILWGPPGTGKTTLAQAIAHGSSRRFVELSAVTAGVRD 93 
28378233    6 PLADRMRPQSLEQMVGQQDLLKAGQPLRQIi--DQHVNI--PLILWGPPGTGKTSLAQIIASQDDYPFVAFNASTENKAQ 81 
42519086    6 PLADLIRPKNLSQFVGQTKLISEGKPLYQIi--KNHVPI--SLLLWGPPGTGKTSLAQIIAREYDYPLATFNASVDNKAK 81 
193216561   4 NLAQKTRPIALDDFVCNDSQ---RFLFEKIi--ANDDFR--SFIFYGKPGTGKTTISYILASSLKVSFDYFNAAIEKKED 76 
254556440   6 PLADQMRPQSLEQMVGQQDLLKAGQPLRQIi--DQHVNI--PLILWGPPGTGKTSLAQIIASQDDYPFVAFNASTENKAQ 81 
268319502   6 PLADLIRPKDLSHFVGQKDLIKEGQPLYQIi--KNHVPI--SLLLWGPPGTGKTSLAQIIAREYDYPLATFNASTDNKAK 81 
269114890   4 NLANLIRPKILEDFICPQEQ---KKLFQKIi--ENNDYR--SFIFYGKPGTGKTTISYILANALKVNYEYFNAAIENKED 76 
304373330   1 MIATKLRPENLEEFVGQPHL---RTLLEKLi--QTQDKS--SFIFYGPSGTGKTSLAILLAKNLNLKFDIFNATIENKSD 73 
161621803   3 NLANKIRPERLEDIVGQSHLIEL---FKAIi--EKQEMS--SFIFYGESGIGKTTAATVIAKE---KQESYDVFNPTIHS 72 
116629635   9 PLADLIRPKDLSQFVGQKDLIEEGRPLYQIi--KKHVPI--SLLLWGPPGTGKTSLAQIIAREFDYPLATFNASIDNKAK 84 
170781157  94 VRQVMEKAlsdRDlFGVSTVLFLDEIHRFTKAQQDALLPGVENGWVILIAATTENPSFSVISPLLSRSLLLTLEQLDDDD 173
28378233   82 LTKAIAQY------PEQSFVLLIDEIHRMTKTLQDFLLPYLENGHVMLIGSTTENPIMSIVPAIRSRCQIFEFQPLSDTD 155
42519086   82 LMQIINTYp--Y----QSFVLLIDEIHRMTTTLQDYLLPYLENGQILLIGATTENPIMSIVPAVRSRCQIFEFETLDDKD 155
193216561  77 LVAKLK----------LNKILIIDEIHRLNKDKQDILLPYIENDLITIYATTTENPYFKVNPALRSRCAIVEIKNPSIDD 146
254556440  82 LTKAIAQY------PEQSFVLLIDEIHRMTKTLQDFLLPYLENGHVMLIGSTTENPIMSIVPAIRSRCQIFEFQPLSDTD 155
268319502  82 LMQIINTYp--Y----QSFVLLIDEIHRMTTTLQDYLLPYLENGQILLIGATTENPIMSIVPAVRSRCQIFEFKALSDHD 155
269114890  77 LVHKLK----------LNKILIIDEIHRLNKDKQDILLPYLENDLITIYATTTENPYFKLNPALRSRCSIIEITKPTIQD 146
304373330  74 LLQKIKDN----------QVVIIDEVHRLNKDKQDILLSHLEQGETTFYLCTTENPFFKIVPAIRSRTYLLEFKPLSFED 143
161621803  73 KKELLEKL----A---INKILIIDELHRLNKDKQEILLSYLEDDKIILYATTTENPYFKIIPSLRSRLKILRFNKLSETE 145
116629635  85 LTQIINTYp--Y----QSFVLLIDEIHRMTTTLQDFLLPYLENGRILLIGATTENPIMSIVPAVRSRCQIFEFKALSDED 158
170781157 174 LGVLVDRAVAD-----AR--GlggrfALEDDARAMIIRLASGDARRALTALEAAavsaqadasgraraaaegqepdeddd 246
28378233  156 IEIALRRAVTDiy--nLT--Dd----QVDAKALNLIAISAEGDLRIALNILETLhaid---------------------- 205
42519086  156 ISHVLIRALKEvf-hlEEk-------QIDKEAINIIARSADGDLRVALNLLETIhain---------------------- 205
193216561 147 LSKQLKKIALNnq--lDS--------NLSDEIYHFIASQSNGDYRSAINSLDLIstls---------------------- 194
254556440 156 IEIALRRAVTDiy--nLT--Dd----QVDAKALNLIAISAEGDLRIALNILETLhaid---------------------- 205
268319502 156 IEQVLIRALKEvfnlaEK--------QIDKEAINIIARSADGDLRVALNLLETIhavn---------------------- 205
269114890 147 LSSCLKNACLK------Tf-Gv----DLNKDIADYLALQANGDFRSALNNLDLImlif---------------------- 193
304373330 144 IFLRLSLYLKNn----NL--Sq----IIDDSLLKFIIRHSNGDLRQSLNNLSLIlkln---------------------- 191
161621803 146 IFQGLKNIIe------KYklKi----KINDDLLLSIVKFSAGDFRNAINNLDLIetiy---------------------- 193
116629635 159 IEQVLIRALKEv----FHfkDe----NIDRKAVKIIAISADGDLRVALNLLETIhav----------------------- 207
170781157 247 ddgedddedderedadaaaaedpasipipipISTEQVALAVDRALLRYDRNGDEHYDVISAFIKSIRGSDVDAALHYLAR 326
28378233  206 ----------------------------qkqITVAAVQHFAQQQHFSYDRKATKHYDYLSAYSDSMAGSDTDAALYYLTI 257
42519086  206 ----------------------------gdeISIESVKEFVKGQHFAYDRKATKHYDYLAAYSDSMAGSDTDAALYYLTV 257
193216561 195 ---------------------------ktkkLTLDEIKKILPAIQFTGDSNGDAHFDHLSAFHKSLRGSDPNAALYYGFI 247
254556440 206 ----------------------------qkqITVAAVQHFAQQQHFSYDRKATKHYDYLSAYSDSMAGSDTDAALYYLTI 257
268319502 206 ----------------------------geeISVKNVKEFEKGQHFAYDRKATKHYDYLAAYSDSMAGSDTDAALYYLTV 257
269114890 194 ---------------------------kdqeFSLEAIKKIIPSIQFSSDESGDNHYDYLSAFHKSLRGSDIDAALYWGFI 246
304373330 192 ---------------------------kkknIEKEDIKAIIPSMNFYSDEKGDNHYDYLSAFHKSLRGSDEDASLYYGAI 244
161621803 194 ---------------------------pntnVDFESIKKIFPSMNFYTDKDADKHYDTLSAFHKSLRGSDPDAALYYGML 246
116629635 208 ----------------------------nedLSVEEVKQFVKGQHFAYDRKATKHYDYLAAYSDSIAGSDTDAALYYLAV 259
170781157 327 MIEAGeDPRFIARRIIVSASEDIGLADPEALVVAVAAADAVQLIGMPEGRIPLAQAVVHLATAPKSNASYLGIDQAIADV 406
28378233  258 LLKND-DLPSVVRRLREIPYTYIGLANPEQVTQIVVAANQAEKIGMPKAKYPLMFATMLMCISPKSGSFDQSWEKLDQDT 336
42519086  258 LLKNG-DLPSVVRRLREIPYTYVGLANPEQVTQIVVAANQAEKIGMPKAKYPLMFATMLMCLSPKSGAFDEIWEKLDKDT 336
193216561 248 LVESG-DFDGLFRRMICAAYEDVGLANPNLPVQVMNAIDAFERLGLPEGYLPIANAILEIALSPKSNSAYLAYHSVLEDL 326
254556440 258 LLKND-DLPSVVRRLREIPYTYIGLANPEQVTQIVVAANQAEKIGMPKAKYPLMFATMLMCISPKSGSFDQSWEKLDQDT 336
268319502 258 LLKNG-DLPSVVRRLREIPYTYVGLANPEQVTQIVVAANQAEKIGMPKAKYPLMFATMLMCLSPKSGAFDEIWKKLDKDT 336
269114890 247 IIKSG-DFDGLFRRMLCASYEDVGMANPKLGSEVLSAIECFERIGMPEGYLPITQAILNICLSPKSNTVYSSSTLIKSII 325
304373330 245 ILHSG-DIDGLIRRLIAVVHEDIGLANPLLSIKVQSAIWAMERLGMPEMKLPLAHIICEIALSPKSNSTYLAFEKAQELI 323
161621803 247 LAKAG-DIDALLRRLIMVAYEDIALANPNASIKVDAAINAIERVGFPEANTILAKIIIEIALSPKSNSTYVSMNKILDKI 325
116629635 260 LLKNG-DLASVVRRLREIPYTYIGLANPEQATQIVIAANQAEKIGMPKAKYPLMFATMLMCLSPKSGVFDEIWQKLDEDT 338
170781157 407 RAGAFGRVPLHLRDAHYPGAKRLGHGKGYRYPHDADIGVVTQQYLPDELV-GrTYYSPT-QHGHERDLSARLEKLRr--- 481
28378233  337 QNPSQHPMPRGLRDMHYKHSEEITGGGLIDNPFQMPHQIAQQNYMPKGLAgR-RYYYPK-DNENERKLGAQYLklhr--- 411
42519086  337 THPNEHPMPRGLRDMHYKHSEEITGGGLIDNPFTQPFQIAKQNYMPKGLEgK-RYYFAK-DNVNEKKLEQQYLKL----- 409
193216561 327 RSGQLFEVPNHLKDSSYSSAKKLKRGVEYLYPHNFDRHYVKQDYLPSELKnK-QYYCSQ-KEGFEEKINEYWRKLKge-- 402
254556440 337 QNPSQHPMPRGLRDMHYKHSEEITGGGLIDNPFQMPHQIAQQNYMPKGLAgR-RYYYPK-DNENERKLGAQYLklhr--- 411
268319502 337 THPNEHPMPRGLRDMHYKHSEEITGGGLIDNPFTQPFQIAKQNYMPKGLEgK-RYYFAK-DNVNEKKLEQQYLKL----- 409
269114890 326 DSGNIFEVPIHLKDAHYKSAAKLKRGLNYKYPHDYKNNYIDQQYLPNELK-D-KIHIELnGQGYEQKIKQYWDLIK---- 399
304373330 324 NSNQIYTPPNHLRDSHYQSAAKLNRGVGYKYPHDFENHWIFQQYMPDKLKnE-VLFSYS-SSQAEVKFEKYWENIK---- 397
161621803 326 NNGNIYDIPDHLKDTHYKNSAKFNRPK-YLYPHDFENNYVNQNYLPIELEkN-HFFEFA-NNQNEQKIKSYWEKIK---- 398
116629635 339 DHPSKHPMPRGLRDMHYKHSEEITGGGLIDNPFAQPFQIAKQNYMPKGLEgK-RYYFAK-DNASEKKFEQQYLklhryiy 416
170781157 482 ----iVRGG 486
28378233  412 --fiyNEDY 418
42519086  410 -----HKYI 413
193216561     ---------    
254556440 412 --fiyNEDY 418
268319502 410 -----HKYI 413
269114890 400 -----NKGE 403
304373330 398 -----KKKG 401
161621803 399 -----IASR 402
116629635 417 gkdydKEGN 425
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