Conserved Protein Domain Family
HMG-box_ROX1-like

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cd01389: HMG-box_ROX1-like 
high mobility group (HMG)-box found in Saccharomyces cerevisiae repressor ROX1 and similar proteins
This family includes class I members of the HMG-box superfamily of DNA-binding proteins, including Saccharomyces cerevisiae repressor ROX1, Schizosaccharomyces pombe mating-type M-specific polypeptide Mc (mat-Mc), Schizosaccharomyces pombe transcription factor ste11, Podospora anserina MAT+ sexual cell fertilization-promoting factor (FPR1), Podospora anserina sporulation minus regulator 2 (SMR2) and Candida albicans repressor of filamentous growth 1 (RFG1). These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. ROX1, also called heme-dependent repression factor, or hypoxic function repressor, is a transcription factor that represses the expression of HEM13, COX5B, ANB1, CYC7 or AAC3. It binds to the DNA sequence 5'-RRRTAACAAGAG-3'. mat-Mc belongs to the mating type protein family, which contains sequence specific DNA-binding proteins that act as master switches in yeast differentiation by controlling gene expression in a cell type-specific fashion. mat-Mc is a positive regulator of MFM genes and is required for conjugation and efficient meiosis. Its HMG box recognizes the DNA sequence 5'-AACAAAG-3'. Ste11 is a key transcription factor for sexual development. It activates the transcription of the matp, matm, mei2, mfm, ste6 and rgs1 genes. It binds specifically to a DNA fragment carrying a 10-base motif 5'-TTCTTTGTTY-3'. FPR1 controls fertilization, probably by determining the mating type. SMR2 is a transcription factor that is required for post-fertilization events. It is required for the developmental events that occur in the female organ after fertilization. RFG1 is a transcription regulator that functions in both the positive and negative regulation of filamentous growth, depending upon environmental conditions.
Statistics
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PSSM-Id: 438791
Aligned: 69 rows
Threshold Bit Score: 66.4529
Created: 13-Oct-2021
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
putative DNA
Feature 1:putative DNA binding site [nucleic acid binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         ## #####  ##      #                    ##  #  ##      #   #  #   #  #          
P25042        10 IPRPKNAFILFRQHYHRILIDewtaqgv----eiphnsNISKIIGTKWKGLQpeDKAHWENLAEKEKLEHERKYPEYKYK 85  Saccharomyces c...
OJT01637      27 IPRPPNRFILWRAAFCKDQKDkvtgk-------ripqsIISKSAGPIWASLPeaQKSFWANEAKKAKLAHMEKYPNYKFA 99  Trametes pubescens
PAV17379       6 IPRPANCYILFRKEMRKAYVPppgkr--------aderARSKFTSEMWKRMSkeEKAPWREKARLADEEHKSKYPNYKLT 77  Pyrrhoderma noxium
KIY70174      38 ITRPPNCFILFRQHFAENHIKpqdpka-----kaprqaTISKEASVRWGNLSleEKSVWREKQDEVAAAHKLEFPNYKFT 112 Cylindrobasidiu...
TFY77091      17 IKRVPNCFILYRRALIHGNVSgttlvrvddegrpvqqsVLSKAIKRLWHDLSeeDKAPWREEFRRLKAQQLIDHPDYKYH 96  Hericium alpestre
XP_007307740   6 IPRPPNQFMLFRAAAHDGEVSgllph-------ghsqrDFSRIVGERWRTMSkdEKAVWKQRQEEVKAAHLLQNPGYRYK 78  Stereum hirsutu...
AFO66695     262 RSRPINCFLLWSKWARPKLAKrfpd---------spnwEISMLLGEVWKLLPkkDKGQYHKNAEILRQEHRQSHPDLYKQ 332 Leucosolenia co...
EPS36749     476 SRRAPNCFLLYRTWFSQQVRRdnpk---------meniAISRSAAESWRKLPapEKQAWIERAAVLRNIHKERYPNYVYA 546 Dactylellina ha...
EME47272     193 IPRPPNQFICFRNRESMRVQQeaelneg----akirhdEVSKRVAAKWNVMTpeQKAPFKAQADRLAAEHKIKYPDWSFR 268 Dothistroma sep...
KDQ11170      37 IPRPPNCFLLYRSWVRQHKMKqmsdg-------kkneqNVSVIVGELWESLPeeKKDIFRRQAQIIKAAHQLKYPDYKYS 109 Botryobasidium ...
Feature 1         
P25042        86 P 86  Saccharomyces cerevisiae S288C
OJT01637     100 P 100 Trametes pubescens
PAV17379      78 L 78  Pyrrhoderma noxium
KIY70174     113 P 113 Cylindrobasidium torrendii FP15055 ss-10
TFY77091      97 P 97  Hericium alpestre
XP_007307740  79 P 79  Stereum hirsutum FP-91666 SS1
AFO66695     333 R 333 Leucosolenia complicata
EPS36749     547 P 547 Dactylellina haptotyla CBS 200.50
EME47272     269 P 269 Dothistroma septosporum NZE10
KDQ11170     110 P 110 Botryobasidium botryosum FD-172 SS1

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