Conserved Protein Domain Family
PBP2_ProX_like

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cd13606: PBP2_ProX_like 
Bacterial substrate-binding protein ProX of ABC-type osmoregulated transporter and its related proteins; the type 2 periplasmic-binding protein fold
This group includes periplasmic substrate-binding component of ABC transport systems from gram-negative and -positive bacteria that are involved in uptake of osmoprotectants (also termed compatible solutes) such as betaine, choline, proline betaine, carnitine, and L-proline. To counteract the efflux of water, many microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
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PSSM-Id: 270324
Aligned: 63 rows
Threshold Bit Score: 201.64
Created: 31-Jul-2009
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative chemical substrate binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the osmoregulatory transporter family.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           # #                                              ##  #                    
NP_218276  42 SIVVGSGdFPESQVIAEIYAQVLQAngfDVGRRLGIGsreTYILALKdhSIDLVPEYIGNLLLyfqp------------- 108 Mycobacterium tube...
BAH34835   49 QIVVAADaSVESSVLAEVYSTVLSSsglSARVESVGGgrtQSLEALDaaRVTLVPEFTGALLDhy--------------- 113 Rhodococcus erythr...
CBT75296   42 TIVVGSQaYYSNEIVAEIYAQALEDagmEVERKFNIGqrdAYMPQLEdgSIDVSPEYTGNLLQfykk------------- 108 Arthrobacter arila...
EGE37238   53 PIIIGSQqYYSNEIIAELYAQMMEKtglTVTRQYQIGqreVYLPELEagKIHVIPEYGGNLLEyysktsasgsptaaatp 132 Actinomyces viscos...
ACU86762   52 TLAVGSQaYYSNEIVAELFAQVLEAegfTVDRQFQIGqreVYMPELEagSLDVLPEYLGNLLQhyds------------- 118 Brachybacterium fa...
CBL57145   36 GLVVGSQqYYSNEIIAECYAQVLEAsgiAVTRQFEIGqreVYIDEMTsgKIDLIPEYSGNLLQyfnk------------- 102 Propionibacterium ...
EFK54379   38 DIVIGTAnFPEAEIIGQIWAAALSDagfDVDVASGIGsreVYMTALEdgDVTVVPEYAGNLAAfydd------------- 104 Corynebacterium ge...
EEH64719   46 PLVIGSSkYYSSGIIAEIFAQVLESkgiAVDRQFNIGaraVFLKEFEdgKIDLMPEYAGNLLQyyka------------- 112 Actinomyces coleoc...
YP_705940  82 EIVVGAGdGAESRILAEIYAGALRStgaPVTTDGGLGdrtAYLGQLDagNVTLVPEFTGRLLRyy--------------- 146 Rhodococcus sp. RHA1
EHK80965   27 TVIVGAGeRPDEELLAQLYAGALRSsgiDVQVRSGVA---DPTPALDaaDLTLIPGYTGRLLAsydp------------- 90  Rhodococcus pyridi...
Feature 1                                      # #                                            
NP_218276 109 datVTMLDAVELELYKRLPg-DLSILTPS-PASDTDTVTVTAATAARw---nLKTIADLaphsadvKFAAPsafqtrpsg 183 Mycobacterium tube...
BAH34835  114 --dPSSPARKADDVFEALSrsLPEGLSVS-DYAMAEDRAVLALDTAYaqslgAKTIEAFapscaaaTPLVSvrfv-edga 189 Rhodococcus erythr...
CBT75296  109 dteARSGDEVYSELEKALPd-SLAVLEAA-QASDQDSYTVTKKFAEEn---kVTSIEDLadvgkklTVGGPpeleqrpyg 183 Arthrobacter arila...
EGE37238  133 srtAGDTASIQDTLLRTLPh-SLTVLNPA-EATDQDSLTVTKATAQAh---sLTSIGDLaslgrsvTIAANsefttrpyg 207 Actinomyces viscos...
ACU86762  119 eagTASPEEIHAALGEALPe-GLRVLSFA-EASDQDSYTTTSDFASAh---sLAAIGDLagveedlKIAANsefdvrpyg 193 Brachybacterium fa...
CBL57145  103 dtqVTDRDAVREAVVKALPa-SLHVLDQA-DAGDQDSYTVTRASAQEh---sMSSIGDLaalgttiTVAANsefatrpyg 177 Propionibacterium ...
EFK54379  105 lpeGADEQTIRDTLASSLPe-TIEVGEFS-PAESADAYRVTAETAADn---dIQTIADLdkl-dqiTVAAPpefaerryg 178 Corynebacterium ge...
EEH64719  113 ddpAVSTEEIKAALPGALPk-GIRVLDLA-EATDQDSYCVTDMFSINn---gIGSLEDLaklgrpiRLAGNseladrpyg 187 Actinomyces coleoc...
YP_705940 147 --dPESTETEQDDVFEALSk-ALPQGLSIsDYAAAEDRSALAVTSQTsgqldLTTLDELapscsrsTAVLApa-----fe 218 Rhodococcus sp. RHA1
EHK80965   91 gadATDAEDVFEALARALPd-ELTISDYA-SAQDRAVLLADRERLTQw---sVSRVADLagrcadlTFAVTedfd-tagg 164 Rhodococcus pyridi...
Feature 1                                                   #                                 
NP_218276 184 LPGLRHKYSld-iaPGNFVtindg---ggavTVRALVEgtatAANLFSTSaai----pqnHLVVLEDPeh---------- 245 Mycobacterium tube...
BAH34835  190 VEQLAEGAEc---vFAGVDqa---------tPADVPGAq---VFGTTTLSala----qsgAVTVLADSnh---------- 240 Rhodococcus erythr...
CBT75296  184 PKGLESTYGv----KAGFSatg-------dtTVEDLVAgtvnVANVFTADpri----kteQLVVLEDPks---------- 238 Arthrobacter arila...
EGE37238  208 PKGLKAVYGv---dASVTPveds----ggplTVKALTDgtvdVADIYSSDpai----gakDLVILSDPqm---------- 266 Actinomyces viscos...
ACU86762  194 PDGVESVYGv---dVTVVPveds----ggplTVQALLDgdvqLADIYTADpai----aenDLVVLEDPes---------- 252 Brachybacterium fa...
CBL57145  178 PTGLKRLYGv---dATVLGveds----ggplTVKALLDgkvqAADIYTADpsi----asnDLVVLSDPkh---------- 236 Propionibacterium ...
EFK54379  179 PPGLTSVYGidpskIRVKPisda----ggplTVQALVEgaaeTANIFTTSpaitgkgdrpDLVILEDPln---------- 244 Corynebacterium ge...
EEH64719  188 PKGLKEKYGl---dVELVPvedg----ggplTVKALKDgtvdIANIFSADpqi----dkeGLVPLMDPkh---------- 246 Actinomyces coleoc...
YP_705940 219 ADALPDLTGc---tFAQTRtvaddaaavgelAAPASTDgavrVAGVTTASpdv----sdaDLVLLADDeh---------- 281 Rhodococcus sp. RHA1
EHK80965  165 LTALERADCr----PREVRrie------daqSVAVASEpd-tVVGTTTTSsalaeidadsPVSTVPDApdrspqddtnad 233 Rhodococcus pyridi...
Feature 1              #                                                       
NP_218276 246 -----nFLAGNIVPLVNSrkksdHLKDVLDAVSakLTTAGLAELNAavsgnsgvdpdQAARKWVR 305 Mycobacterium tuberculosis H37Rv
BAH34835  241 -----vLAAQNVVPLFRAgalgdSAVKALSVVAgeLSTTDLAAMIEqvrtg-kasasEVARTWWD 299 Rhodococcus erythropolis PR4
CBT75296  239 -----lFLASNVVPLVSAeq-seKLAAVLDPVSqkLSAQTLVELNVqstvg-qqsaaDIASAWLE 296 Arthrobacter arilaitensis Re117
EGE37238  267 -----lILPQNVTPLVSAsl-paIAATAINRVSalLTPDELRSLNQrstge-klsskTIATDWLT 324 Actinomyces viscosus C505
ACU86762  253 -----mILPQNVVPVVSEkv-ddAAAEAIDAVLaqLSADDLVELNRqsvvd-qassaEIATGWLT 310 Brachybacterium faecium DSM 4810
CBL57145  237 -----lILAQNVTPLASArv-daAAAAAINKVSaqLGQSELQSLNSqsvtk-qlkaaDIAREWLR 294 Propionibacterium freudenreichii ...
EFK54379  245 -----lIPPQNVVPVIRAgqlppEALDVLNNVNasLTTDDLVEMNLrnvgderaepaVIARDWVD 304 Corynebacterium genitalium ATCC 3...
EEH64719  247 -----lIVTQNITAIASDrv-paEVGEAVNMVLakLDQAAILGINSksvid-qqaaeQIAADWIA 304 Actinomyces coleocanis DSM 15436
YP_705940 282 -----vFTAQNVVPLFRIgtlteAQLKALNVVAgeLTTADLADMIGqvrgg--adsaDVARVWLD 339 Rhodococcus sp. RHA1
EHK80965  234 dapapvLPAQNVVPVFRKgtldeAQLDALRTIAgeLTTSDLTELRArveeg--ddpeTVAREWID 296 Rhodococcus pyridinivorans AK37

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