6K6S,5A0T,6K6W


Conserved Protein Domain Family
RnjA

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COG0595: RnjA 
mRNA degradation ribonuclease J1/J2 [Translation, ribosomal structure and biogenesis]
Statistics
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PSSM-Id: 440360
Aligned: 557 rows
Threshold Bit Score: 342.427
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6K6S_A        18 L----HSNEVGVYALGGLGEVGKNTYAVEYKDEIVIIDAGIKFPDDNLLGIDYVIPDYTYLEQNQDKIVGLFITHGHEDH 93 
WP_011160985   7 TnwrfQVNDIKFFALGGLGESGKNFYVLQINESYFLLDAGLKYPNTALYGIDSMIADYYKLQDIKDKIKGVFLSSAFETN 86 
WP_012242777   1 ------MSEIRFFALGGLGENGKNMYVVDIDRQYFILDAGLKYPTQELYGVDEIIPNYKMFMNIKDRVKGIFLSHAHEDH 74 
WP_012358638   1 ------mIDIKFFALGGLGENGKNFYLLQINESCFIIDAGLKYPSVSLYGIDAMIADYHKLESMKDKIKGVFLTSAFETN 74 
WP_003773289   1 ------mDKIRFLALGGLDEDGKNMSVIEINDEIYVVDAGLKYPQTDQLGVEIVIPDLSYLKKNKKRVKAIFITHGHDDV 74 
WP_011182989   1 ------mSKIKFMALGGQDERGKNLFVLDIDDNLFILDAGVKYPDKGILGVDIVTPKLDYLKNNKQKIKGIFLTNSASYN 74 
WP_025208501   1 ------MSKIRILGLGGLDEKAKDLYVLEIDSKIFILDSGVFEPFSSLLGINYFIPKIDYLKENIDKVKGIFLSSPNRSM 74 
WP_038470406   1 ------MARIKILALGGLGENGKNMFCIEVDNSLFILDAGLKYPTTELLGVDSIVPDFTYLEKNKSRIVGLFLSHGHEDH 74 
WP_025734608   1 ------mSDIRFFALGGQDERGKNLYILEVDNDLFILDAGIKFPEKGIFGVDVVIPNFEFLRENKERIKGLFLSNCSAYN 74 
WP_106721016   1 ------MSQIRFFALGGLGENGKNMYVVDVDKDLFILDTGIKYPSAELYGVDEIIPDYRVLIRAKDRIKGIFLSHAHEDH 74 
6K6S_A        94 IGGVPFLLKQI-NVPIYGGPLALGLIRNKLEEHHLL-R-T-TELHEIDESSVIKSKHFEISFYLTTHSIPEAYGVIVDTP 169
WP_011160985  87 LGALPYLMKDF-DIPVYASYFTMQVLKAHFQSHKIN-Y-RnFNLQIVKIDERLIFDDVAVAFFATSQLIPETLGMVFQTK 163
WP_012242777  75 IGALPHILKEL-NVPIYATPFTMEVVKDSLKEKNFDlN-Q-LTLNTIDQNSIIRIGNVKITFFSTTHSIPESVGIALHTV 151
WP_012358638  75 LGAVPYFIKEY-NLPIYTSYFTMEVLKNYFASHKIN-Y-QnLNLNVIKTNEILRFKDVEISFFATSQLIPETLGISFQTS 151
WP_003773289  75 MGALPYLVKEV-NAPVYATPLIALMIEDLFKENKVK---N-AHIHKIKRNSRFKIGERRFVAFGLTHSIPDTFGIAIDTD 149
WP_011182989  75 MGSVPYILKTM-DVPVYCNEITQLVGKIKISRMRIK-NtKdQNFVVVKDKQILDFGKVKVEVFRTTSASPQSYGYAFHTE 152
WP_025208501  75 LGAIPQILKLFpKIKVYGSSITIKSLDVFFKDNFYV-K-K-ALKNVITEKDSLKIDDILIRVIDLNGSCPGTLGYVFNTK 151
WP_038470406  75 IGAVPKLLKTL-NIPIYGSYFTLAILKDSIKDYGLDiN-D-YKFNIVSSKKTLSFDDVSIDFYNVTHSIPESFGISLSTK 151
WP_025734608  75 MGSVVYLCKEI-NLPIYCNEITSHVLKIKAQRSRLK-NiE-QNLNIIQDKQILKFGNVKVEVFRTTSSTPQSFGYAFHTD 151
WP_106721016  75 ISALPHILRDL-NVPVYATNFTMQIVKDLLKEEDFNlE-D-YTLNTISQNSIIKFGGVRVSFFNTTHSIPESVGIAIHTL 151
6K6S_A       170 EGKIVHTGDFKFDF-TPV-GEP-ANIAKMAQLGHEGVLCLLSD-----STNALVPDFTLSEREVGQNVDKIF----RNCK 237
WP_011160985 164 RGSIVYSGDLKLLH-SKNkFFQ-TNFTRLAQLAQPKVLAFLPScrgafSTSAHNNDASSFEHKLNNYFSNHL----LKSE 237
WP_012242777 152 DGVIVYTSDFTFAQ-YSDpNYQ-TDFPKINDLAQKNVIALLVE-----SLGSTLIQDGGIHNALTHKINSVY----ANAE 220
WP_012358638 152 LGAIVYTGELKSLE-SQNqFFQ-TNLTQLTKSTQQKVLAFLPA-----SQRAFNYSYDESQNNFDHKISNYFinysLKPK 224
WP_003773289 150 QGYVVHSSEFIIDFdVRNqGFM-CDVANISELGKKGVFLLTAE-----SVASKRQGFTSPNHRITKRIERVF----EETN 219
WP_011182989 153 EGTIVYAGDYIIDG-KEQsYFS-TDFNHISEIGKKGVLALIAD-----SEYASRSGFTVPNHKIENFISTSF----KEKK 221
WP_025208501 152 DGNIFYLSSYIFDY---IeEYKiSIFDHIKKYTIEKNLLLISD-----SLNMNRNSSIYPLYKISRYIEKYF----DE-K 218
WP_038470406 152 DGVIIYAPDYNFDQ-NVHkSYK-TDFDKLSRIAGKPVLALLTE-----SLGAERTGYTHSSTSLDYALNQAF----YQAE 220
WP_025734608 152 KGIVVYAGDYIIDG-QEQsYFS-TDFRHLSNIGEAGVLALISD-----AETASRSGFTVPNHTITNYISAPF----KEKK 220
WP_106721016 152 DGVIVYTSDFTFDQ-SGHiQYH-TDFKKINELAEKNVLALLME-----SLGSTLILNGGVNQNLDHKLNSVF----ANAD 220
6K6S_A       238 GRIIFATFASNIYRVQQAVEAAIKYNRKIVTFGRSMENNIKIGMELGYI-KAPPETFIEPN---KINSV-PKHELLILCT 312
WP_011160985 238 GIIVIPSLMPDLLKIQSIVDLACRLNFKITFLGRKSEKIIDIALKKGFL-KVPSFNLVELK---TLEDSkKHPKLVVFVL 313
WP_012242777 221 GRIIVSLFSSDLQKIQRIVDISLNHHKKIAIIGRRAQRIVDIAIEKGYL-VIPKEALVNLKfidEKNKN-DANNLVCLVT 298
WP_012358638 225 GIIVVASLAPDLFKIQKAITLACKLNFKVAILGNENEAIIDVALKKEFL-KIPDANFVKLN---TFEEHtKHNQLVVFLF 300
WP_003773289 220 ERILVTLYEQNIYRLIEVIETAQKFKRKVFFYGEKQRRLMKHLERLNYY-HMPKGLEIKPE---QFNN--DIKDVVVIVS 293
WP_011182989 222 TKIAIGIFEEDIFKLGEICMAAKENNRKIAVYGRTMTEILKSNLINENL-QIVPEDIITVD-----EYM-KSENGLLIIS 294
WP_025208501 219 KRIFITLYEDNIINIIEIIKLAKEYNRQIYIFDLEFLELLKIMIKEQKIpNFPfKKAMDLK-----SST-LPEEVLIIIS 292
WP_038470406 221 SRIIVTSFSTDLVRIQKIIDIALKYNRKIAIIGRKTQRTVDIAVNLGYL-KIPEDNLVNLRfidEKNKN-ELKDAVVLVT 298
WP_025734608 221 TKIAVGLFEEDIFKLGEIVTVAKENGRKIAVYGDTMKAVLESNLICDKF-CIKPEDLIS-----NEEYM-KSENGVLIIA 293
WP_106721016 221 GRIIVSLFSSDLKKIQRVVDMCLSHHKKIAIIGRRAQRIVDIAIGDGYL-DIPKSSLINLKfidDKNKN-DDKDIVALVT 298
6K6S_A       313 GSQGEPMAAL-SRIANGTHKQIKIIPEDTVVFSSSPIPGNTKSINRTINALYKAGADVIHSKISNIHTSGHGSQGDQQLM 391
WP_011160985 314 GKHFESLFHL-QKMCQKTDTLIHLTPQDLVLLMSKEMAGIAKMQSQTLDLLSRHNIQAHVLV-KDLDACSNDYEKTLKLM 391
WP_012242777 299 GNRHEPFYML-QRMCRKQDRLIHISENDTILLMTSPVPGTEKMAARTLDILYRSDANIEVVD-KRLLASNHATAEEIKMM 376
WP_012358638 301 GKHFATLQRL-QQMANKTDPKIHLNSQDLILLMSQDMAGIAKMQSQTLDTLSRHNIKSHLLI-KDLSLSESNYEQNLKIM 378
WP_003773289 294 DIGPSVFNKM-GRIAMGEDQLVEVNENDHVIVASPVVPGTEAVAGAMINELYKDGVKVMSLNYKDV-MPMHASVEDLKMM 371
WP_011182989 295 GTGDVLYSKL-AKIATGNDEVVEFTEKDLIILATPPAPGVEKRHAQILDELARTDARLLALSDRNI-WSMHASYEDIKVF 372
WP_025208501 293 GTRSNLYHRIkSSLIEDNIYNLEIEKEDIFIFACEPQPGNEAIFQNITSEVSKIDPKTLIlT-EKDKIWIHPTQYDLKNY 371
WP_038470406 299 GDRHEPFYML-QRMVKKLDRLIHTDLKDTIILMTPPVPGTEKIAARTLDILYRNDLNVIKIS-KNILPPSHASSEDIKLL 376
WP_025734608 294 GNGDVLYSKL-AKIANGNDNVVEFGEKDLIIIATPPAPGIEKRHAQILDELARTDARVVALSDKNI-WSMHASYEDIKVM 371
WP_106721016 299 GNRHEPFFML-QRMCKKIDRLIHISDRDTVILMTPPVPGTEKMAARTLDVLYRSDAKVENID-KRLLTAAHATGEELKMM 376
6K6S_A       392 LRLIQPKYFLPIHGEYRMLKAHGETGVQCGVDEDNVFIFDIGDVLALTHDS--ARKA-GR-I-PSGNVLVDGSGigDIGN 466
WP_011160985 392 LNFLKPQYIIPVMGEYRHQYQVQKIAQSLGFKLNQTFLLENGSIWHCDAQKdaFAES-NTgV--LTEILIDGTPviGGQD 468
WP_012242777 377 INLLRPKYIIPTIGEYRHQYGVKQLALQMNYKEDEIFLLDNGDAVNLSKGKepFVSK-NE-I-KTSEILIDGTAvgDVND 453
WP_012358638 379 LNFLKPRYIIPVMGEYRHQYQVKKIAQKNGFKSNQIFLLENGSIWRASSDKepFVE--NK-VfSLNEILIDGTPvaDGKE 455
WP_003773289 372 IALLKPKYYVPVKGEYQNLVANASVAVDMGISAGNIVILDNGQVAEFDEGR--LKAT-SE-IlKLEDMLIDGKDhlDTSG 447
WP_011182989 373 TSILNPKYFIPVKSLFKDSLKAEKAAIEAGVNERNIVILDNGQVANISKNS--ISISdKK-I-DIGNSYVDQAGvgDVGA 448
WP_025208501 372 VGLLKPKFIMPVKGYYKEFIEARNILKSIGYKDDQVIIAENGEIYEINDGNn-MGIL-RK-IkEVGEQVIEGMNdeLIDS 448
WP_038470406 377 INILNPKYIVPVIGEYRHLYALRNLCRDMGYNNKNIIMLDNGVVGELNNKSl-VSTK-EK-V-PSGDILVDGILddDVSD 452
WP_025734608 372 TSIMKPKYFVPIKSLYKDFLRAEQAAIDAGVESQNVGIIDNGEILILSKNH--LAISeES-IkKTNDVYVNGFEiaDIGN 448
WP_106721016 377 MNLLKPKYVVPTIGEYRHQYGLKRLAVEIGYDPEEVFILDNGDVLNIKDKD--AFVSkNE-I-TVGDILIDGTAvgDVND 452
6K6S_A       467 VVIRDRKLLSEEGLVIVVVSIDFNT-NKLLSGPDIISRGFVYMRESGQLIYDAQRKIKgDVISKLNSN-----KDIQ--W 538
WP_011160985 469 FIMKDRELLAADGVVIVVANVNAKH-KKIVGAPQLVSKGFLADSETSHIFPKLKAIFD-EKSEIFLKK-----KYLK--W 539
WP_012242777 454 FVMRDRELLAADGVLLIIANINAKQ-KQVLGEPKIVSKGFVHLNENESMIDEIRAIFD-KVTDKHLKG-----KYIN--W 524
WP_012358638 456 FIMKDREFLAADGVVILVVNVNAKY-KKIVGEPKIVSKGFLEQTETNNIFAKLKDVFD-EQSAVFLTN-----KYLK--W 526
WP_003773289 448 LVLRDRQTLATDGSIIVGMVINNKT-KEILGGPDVQSRGVIYLKDADNIMKEVGVILE-QTILKLVEK-----HKYD--N 518
WP_011182989 449 IVLNERKLLATDGVMIIGATIDSRN-KELISMIDTQMRGVLYIKEENPIFKIIQKEIE-SLLEQGQSQfkenpSKYD--V 524
WP_025208501 449 EIIKQRQELGKDGLLTIGCIVSKEQkYKVVSNMDIQMRGLIYIKNQEKLMQNLENEIK-LIIEE---------NREDfiL 518
WP_038470406 453 VVLRDREMLAEDGVLLIIANIDARN-KKVVSDPEVVSRGFVYMKENEDLIKGVTDLFY-YVSENEFTG-----KYIN--W 523
WP_025734608 449 VVLNERKQLATDGVIIVGATLDARN-KELISLLDIQIRGVIYIKDDGVIFNLLQKAIE-NIIIKGQEQfkenpKAYD--I 524
WP_106721016 453 YVMKDRELLAEDGALLIVAHVSPKQ-KKILGEVEIVTKGFVYVQESEEILAKVKELFY-KTSEKHLNG-----KYIN--W 523
6K6S_A       539 HQIKSSIIETLHPYLYEKTARKPMILPVIMKV 570
WP_011160985 540 NDFKKNIRESLVKFLFKETKKRPIVIPIFISV 571
WP_012242777 525 NEYKLQIRDEVSKYVYQTARRRPITIPVIIST 556
WP_012358638 527 NDFKKHIRESISKFLFKETKKRPIIIPIFISV 558
WP_003773289 519 VTARNEARDVIAKYIYKQTGKRPMILPVIIEI 550
WP_011182989 525 NEVKKDIATRVRTLIKQESGKQPIVLVIVNEY 556
WP_025208501 519 NRVQSIMVKRINKILRLSIKKIPTIIIKIKQI 550
WP_038470406 524 RNYKSNVKNHISKYLYRETRRSPIIIPVLIDT 555
WP_025734608 525 AELKKEMVSKIRSTIKQESGKQPMALVIINEI 556
WP_106721016 524 NEFKRDVRNDINRYIYQEIRRSPITIPVIIST 555
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