Conserved Protein Domain Family
RpnC

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COG5464: RpnC 
Recombination-promoting DNA endonuclease RpnC/YadD [Replication, recombination and repair]
Statistics
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PSSM-Id: 444215
Aligned: 277 rows
Threshold Bit Score: 90.7909
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_012461078   1 MSEnlkhDGLFKDLMNDskAALDFTNDFL----PNEvknildLSTIKVEQESFveaNLRRSMCNVLFSVKTKnNnDAFIY 76 
WP_011243043   1 MKT----DKLFYAIFAT--LPDLVTELVEg--iPPE-------AKYRFSAPVV---KAQEFRLDGLLEPIEE-G-SGYPT 60 
WP_014778202   1 MKT----DNLFFRLFQA--LPTLVLELAEieieIAD------ACRYEFRAEEV---KQTAFRLDGLLIPPTE-T-LSAPL 63 
WP_014778537   1 MKT----DSSIYTFLAT--GPEA-FRVLTg--gLTL------EGEYVFRSVTF---KSLERRADGLYEPLD----PDRPV 58 
WP_015228461   1 MKT----DDIFYQIFQK--SPGLAFELMGe--tP--------PCEYQFRAQEV---KSFGFRTDGLMFPRST-N-PNHPI 59 
WP_100918533   1 MKT----DKQIYTLLGA--DPD-FLRVLTd--gIAV------RGAYLFEALDV---KGLERRTDGVLIPRA----VDEDI 58 
WP_100920531   1 MKT----DHPIYLFLSA--GPEA-FRILTg--gLRL------AGGYRFCSLTI---KTLERRLDGILEPDG----HEAPV 58 
WP_100921528   1 MKT----DHPIYLFLST--GAEA-FRVLTg--gHQL------VGEYRFCSLTI---KGLERRLDGIFEPEG----HAGPV 58 
WP_100922559   1 MKT----DPSIYEYLST--GAEA-FRILSg--gVTL------SGSYRFVSLTL---KGIERRLDGIYEPDDH----DGPV 58 
WP_108615269   1 MKT----DKLFYRIFLW--QPELIAELVPg--iPMD-------CQFDYSAPVV---KEQEQRIDGLFTPVGD-D-PDLPL 60 
WP_012461078  77 VLIEAELRSDYWIAFKLWQYTLSILKRHKKglkkrtkergklpIVVPIVVYHGSER-FNAPRTLWelfddpkLAKELmGS 155
WP_011243043  61 VFLEAQMQSDRGFYSRYFAELFGYIRQYPEa-----------aNWRGLLLIRARSLdLGEESSFT----------EL-LQ 118
WP_014778202  64 IFVEIQAQADDDFYGRFFSEIFLYLYRSVPr-----------rPWLAVAIYPSRATeRPDT-RYN----------SL-LS 120
WP_014778537  59 YLIEFQAQSAAAAWYNLLTKIGLYGEEHPEr------------EVRGLLIVLHARAlPTRPSRVg-------------AP 113
WP_015228461  60 ILLEAQMQPDPQLYYRILNELTTYLRQYQPp-----------nPWRVIVLYPERSVeRVIP-QMD----------QI-LA 116
WP_100918533  59 WVMEFQAQADPLIYHRLLLEMALVGERHPQr------------VVRGFVLFAEATLdPCTEPWH--------GLMTR-DP 117
WP_100920531  59 YAIEFMGQPAPGAWYNLLTKIGLYGEQYPEr------------EVTGILIYLRERDrPACPSWIg-------------AP 113
WP_100921528  59 YVVEFQGQYAAGAWYNLLTKIGLYGEEHPEr------------DVIGIAVFLRERDaPGCPSRVg-------------EA 113
WP_100922559  59 QIVEFQAQPVAGAWYNLLTKLGLYGEAHPGr------------AVRGMLIFLRAGDdPGLPp---------------gAG 111
WP_108615269  61 VFVEAQMQADRGFYGRFFQEVFMYLRQYEVs-----------rPWRGLLIFSSRSQgLGVETPYR----------LL-LD 118
WP_012461078 156 EYLLIDWQAMPd-----SEIKRKATA-ALVHFMkyIHNQPD-IIELWAKFFDTLQeiaqkdKENGFLYIKALLHYTiskv 228
WP_011243043 119 -GRVQRLYLEDl-----IGRSLNSVRlQLLKLL--VVPVAAiGETARAVLLSAEDe-------dAFEQLLELVEAIvas- 182
WP_014778202 121 TPEVRRVYLNDw-----RERPAPTLGlQLIQLL--IAPRKKaCQQAVLLAGQARKgv--lgAELSEATMLDLIETIvvy- 190
WP_014778537 114 ESIAAAICLERflpewlEREPDNPFLaALAPLI--ITRDAAlTERAPALWHAIQHap---lEPAARTALSQILEFWlfe- 187
WP_015228461 117 FCRLQRFYLNEl-----PE--QVSLGqEILKLI--VTPQTEaETKAKALLQRSQQel---sEPSQRDNFVELLIELitr- 183
WP_100918533 118 QPPLRRAYLPEvlkrlaREAPDHPLLgVFLPYL--EADLERlRRQAPTVYRQLQAsa---lPEASRRHCVAVFQSWlma- 191
WP_100920531 114 GATPFGVSLEQvlpdwlAREPDNPYVaALAPLA--IKDDATlQAQAPALWRTVEGap---lPQAQRDLLAQVLEFWffe- 187
WP_100921528 114 GSLAMGVALDRilpewlAREPDNPYVaVFAPLM--IEDDAElRAQAPALWRTVQEap---vLPAVRDLLSQVLEFWffe- 187
WP_100922559 112 PPLCSVAYLDEilpawlEREPDNPYVaALVPLI--IPRTEDlRVRTPAAWQVIRTaa---vAPPVRATLERILEFLlme- 185
WP_108615269 119 -NLVERLYLEDl-----IPRSDLSPNlALLRLL--VLPESEtPESARNLLNVEASe-------eVFQRRLDLVESImas- 182
WP_012461078 229 skNEQPR--LKQLLDENlsieD--RKRimgTIAAQYIDEGRAEGRAEGraegraegraegieigetkgkaegkaegraeg 304
WP_011243043 183 klPQLEIeeIHQMLGIEv---SdlKQT---RLYQSAVEEGEKK------------------------------------- 219
WP_014778202 191 rlPQLTReeIQTMLGMTd---LdlKQS---RFYQEVFAEGRQEGRQEGrq------------------------------ 234
WP_014778537 188 rfRSLTAeeISTMLNIF----TplEET---RAYQSIFVKGEAKGKAEGea------------------------------ 230
WP_015228461 184 ifPEQSKeeVRRMLEL-----VpvKQT---RFYREVKQEGREEGLE---------------------------------- 221
WP_100918533 192 rfKSLSLeeILKMLGEL----TplEET---RAYKELVAKGVTiGRQEGrqe----------------------------g 236
WP_100920531 188 rfRGLTAkeIWAMLNLV----TpiQET---MAYQSIFAEGKTEGKTEGkt------------------------------ 230
WP_100921528 188 rfRGLTAkeIWAMLNLV----TpiQET---RAYQSIFEEGKTEGEAKGka------------------------------ 230
WP_100922559 186 rfPLLTNeeLRSMLPVL----VplEQT---RAYQEIFAKGEAAGKADGe------------------------------- 227
WP_108615269 183 kfPELSLeeIREMLDITq---VrlEDT---RFYRDVLQKGRQEGFQEGrqegrqegrqe------------grqegrqeg 244
WP_012461078 305 raEGRAEGRAEAAQELAMNLLKA--G-FSVEFISENTGLSKKEVVNLKNNIEY 354
WP_011243043 220 -------GRQEGELALVLRQLQRrfEnLTEEQEQQIRSLSLEAIEALSLDWLD 265
WP_014778202 235 ------eGRQEGEAAILLRLIALkfGaPGKSLRQRVLTADAETLLLWSERLLT 281
WP_014778537 231 ------kGKAEGKADSLKRLLTRrfGpLPAGVSARIDSADIPQLDAWLDAVLD 277
WP_015228461 222 ----------EEARSLVIRLLSRrfGeIPSTTQTQIEQLNLEQTESLAEALLD 264
WP_100918533 237 rqEGRQQGRRREARRLVLLLLQRriGvVPAAQQRCIAALSVEQLESLGAALLD 289
WP_100920531 231 ------eGKAEGKADTLKRQLTRrfGtLPDWTLRRIEAAPVAQLDLWLDGIFD 277
WP_100921528 231 ------eGKAEGRASTLKRQLARrfGaVPGWAQRRIDAAPVAQLDAWLDGIFD 277
WP_100922559 228 -aKGKAEGEAKGKADGLKRQLKRrfGaLPRWAVLRLDGAAMDQLDGWLEGIFE 279
WP_108615269 245 rqEGRQEGREEAQTEMLLRLLTRrcGqLSDIQRQQVISLNSGQRDELAEALLD 297
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