Conserved Protein Domain Family
SrmB

?
COG0513: SrmB 
Superfamily II DNA and RNA helicase [Replication, recombination and repair]
Statistics
?
PSSM-Id: 440279
Aligned: 907 rows
Threshold Bit Score: 301.681
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
WP_062405556  62 N-GFIELGLAPELVQAVADLGYTQPTAVQLRAIPLALPTSggskdgksngytDLMVSSQTGSGKTAAFLLPVLHTLIQQm 140
WP_052473039   6 E-RFDQFEFSAPLMRRLKESGHDIPSHLQVACIPSLLAGR------------DLLAHADTGTGRTMAFVLPLLETLDID- 71 
WP_011980405   1 M-SFASLKLSTALTELLEGEGYARPTPIQQKLIPALLDGQ------------NAIASAQTGSGKTLAYLLPALQQINPEa 67 
WP_102243292   5 M-SFEKILSHPTVLAFTTENKLKEPTRIQSLVIPDFIKGK------------SVNVIAKTGSGKTLCFALPICELLKTAe 71 
WP_013631280   1 --------MIEKLSPFLQNIGITQLNEMQLEAITALEKNK------------NLLLLSPTGSGKTLAFLLPLFLRLDVD- 59 
WP_038451296   1 MnTFADFELLPSLLKTLKTLKISKPTDIQKQAIPLIMSHQ------------AVVGVSETGSGKTLAYVLPILNYLKSLe 68 
WP_044557517   2 A-KFEDLLSNSDLLKYIQDQGFSAPTPVQQKGIPLLLKRE------------SLSLLGKTGTGKTLSYALPLVECLKEDe 68 
WP_062542009   1 -----------MIQNILNTLKIASLNEMQEQTLAAAQK-S------------DVILLSPTGSGKTLGYLLSVLPRLKPE- 55 
WP_084006160   1 M-------ENITLDNIKKNLGISEFNKIQVESMEKAKSHN------------ELILLAPTGTGKTLGYLLPILNKINPN- 60 
WP_014021526   1 M----DKNNQTSKETFLERLSLKNFNKMQLEFMEKASGDA------------PVMLLAPTGSGKTLAYLIPMVQHLEAS- 63 
WP_062405556 141 aeqeaaeraefekacadaaakgepapkrakRkdptnprnfkAPTPGALILCPTRELAQQVAQDAIELVKHTrGLRVANVV 220
WP_052473039  72 -----------------------------------------RGQPQVLVLTPSDETSLHVAEVFQDYGKYLpNFHVLPIY 110
WP_011980405  68 e---------------------------kvT----------HHYPRLFILSPTKELAQQIYEVSRPFVNAL-DLNVVLLQ 109
WP_102243292  72 edgmv--------------------gdpkeT----------KGKPRAVILAPTRELALQLQKVFKSVSHHV-KLRVRMLA 120
WP_013631280  60 -----------------------------------------RKGVQAIVVVPSRELALQIEQVFKALQT---GLKVTCCY 95 
WP_038451296  69 esg-----------------------dpvkE----------ENAPRAVVMVPSRELGEQVAKVFKSMTHDT-RLRVRPAL 114
WP_044557517  69 snn------------------------vqvQ----------VGSPRALVILPTKELTSQVFQVFKGISHFA-KLRVRQLL 113
WP_062542009  56 -----------------------------------------VQEVQALILAPSRELAMQIEQVFRSMAT---GFRVDSLY 91 
WP_084006160  61 -----------------------------------------VEGVQALILVPSRELALQIEKVFKSIGS---KFKINCCY 96 
WP_014021526  64 -----------------------------------------TAVATALIIIPSRELALQITEVFKSLKT---NFHACVCY 99 
WP_062405556 221 GGMPYQLQIAKLQ--NANLVVATPGRLLDLQRSMQIKLDQVQFLVVDEADRMLDLGFSDDLADINDMTSQRR-QTMMFSA 297
WP_052473039 111 HQ-SSSIQLRQLKr-GTHVVVGTPRRVAHHVDNSSLSLDGIGRLVLDEADAMLREGFIDDIERLLDHTDARS-QIAIFSG 187
WP_011980405 110 GGGRRTVETERLKk-GVDVIIATPQRALEHIEAQHIDIKAIRHLVVDEADMMFDMGFVGYLEKIFTMMTERS-QKIIVSA 187
WP_102243292 121 GGEAAKANHLLSRd-NIDILIATPGRLSNALKRKELNLKETNYLIMDEADQLLEMGFRRDLENIYKSCDDTLvHVGLFSA 199
WP_013631280  96 GGHSAKIEASSLLndAPTLIIATPGRLAFHIREGNFDVSSVRNLALDEFDKSLELGFEEEITFIVDELFKVD-GMILTSA 174
WP_038451296 115 GGMSLEQARRNTSg-AFEVLLATPGRLVQMLNKDLISLRDVRFLIFDEADQMLDQGFLPDTNRIVDCCPEDV-NLALFSA 192
WP_044557517 114 GGEKGQKSKELSSs-SIDILVTGPGRLVQMVEKKELNLLDVKYLILDEADTLLDMGFFKDIQKMWGFCEWDGcSVGLISA 192
WP_062542009  92 GGHATNPEKRSLTn-PPALLVGTPGRIAYHLREENFSTAAIKTLVLDEFDKSLEYGFQEDMAYIIGQLREVD-KRLLVSA 169
WP_084006160  97 GGHAFQIEQKNLSq-PPQVLVGTPGRIASHIEEETFDYSTVESIVFDEFDKALEFGFLKDMEYIYSSLRSIE-YKMLTSA 174
WP_014021526 100 GGHSMRTEENRLMe-KPKVILGTPGRLSEHAQKGNLTDLNISLVILDEFDKSLQFGFHEQLSVIFKDLSEGQ-KYFLTSA 177
WP_062405556 298 TFAPRIQQLAMRVMHDGgssvQ-K-IQIDNPQEKHNNIKQVLFWADnAQHKRQMLDHWLRDA-TIDQAIVFSSTQIECDG 374
WP_052473039 188 TLPVRLRQLVQRRLRKP----V-K-VRGTEKSAVAPPARLRYWQVD-SAAKLNALTRIFEVEpGFDAAVVFVRGKATALK 260
WP_011980405 188 TITPRVIKLAKTYIK-Pl---K-R-IELDPPGKIADTITQMLYPVL-RSKKEALLAWLISSG-NYEKVLLFVRKKELADG 259
WP_102243292 200 THSSSLDEFCRTIFSEI----DfAsYNSEDKNKLTQSVRTFNIYLK-DDEKLKMTEAFLKNQ-AQGRGIIFVNKHDTVNS 273
WP_013631280 175 TQFEELPAFIA--SREF----F-T-LSFLKNEEHKPSFTTEIIQCK-SKDKLRALLQLLCKY-PNESTLVFCNFREATER 244
WP_038451296 193 TVSKTVEKLMNDLFAKA----E-V-IRSKNSGKVVSTLKTKNLTVE-DGKRWPLFEKVLAQK-VDGGTIVFANTREQCDK 264
WP_044557517 193 TMPNDFDRFKEEVFKKV----DfKeLEV-GGHAIKQEIETFNIDLG-QKEKNKMLELFIDKQ-ANGSGMIFCNRKETTTE 265
WP_062542009 170 TAMPQVPSFTK--LKNP----I-T-VNFLQEANNAPDLQVKAVEVQ-KGNKMSALMGVLCSI-GTASSMVFCNQRDTVEA 239
WP_084006160 175 TDLSEYPEFLR--LNQP----Q-K-LNHLTA-QIPKPLTVLQTEVK-SKEKLTQLLKLIYHL-KAERMIIFCNHRAAVER 243
WP_014021526 178 TTLNTLPEFLP--FKTY----E-K-VDFLKE-GEVMTLLLQLVRTS-SVEKIDSLMRLVSDF-GQESTLVFCNHRDAVDR 246
WP_062405556 375 LAADLQQD--GFSAVALHGALSQGMRNRRLMALRNGQVQILVATDVAARGIDVPTITHVFNFGLPMKAEDYTHRIGRTGR 452
WP_052473039 261 LTEKLRAR--GYAAEALGADSPRKQRTQAFDRFRNGAIDIVVGTDLAVEGLDATRLTHVISYDMPCDAASHVRRIAHLDK 338
WP_011980405 260 VAESLRSW--DYKVGILHGERTHQERKKSLNAFREGRYRILVATDIAARGLDISDLDVVINYDIPHVKHDFIHRVGRTGR 337
WP_102243292 274 LYSQLPEKfpKMKFHALHGEMEAKARKKAYDQFLK-EGGVLISTDITARGMDIDDLVWVMNFDLPFEAVYYIHRCGRVGR 352
WP_013631280 245 VYDMLTDK--GISAVVYHGGLDQQEREKALMKFRNGTSSVIVNTDLASRGLDIPDVQHVIHYQLPLNEESFIHRNGRTGR 322
WP_038451296 265 IAKELTDK--GHACVVYRGEMDKNERRTNLKKFRDGQVGLLVATDLAGRGLDVSNIARVINYHLPKEMENYLHRAGRTAR 342
WP_044557517 266 VYEYLKKSypSKRFFVLNGEMEAKERNASMKKFRD-KGGIMVCTDIAARGIDIPSLNWVLNYDLPFEAVFYIHRSGRVGR 344
WP_062542009 240 VSDFLRDK--GLPHGIFHGGLEQPDRERTLMKFRNGTYRTLVSTDLAARGLDIPEVEFVIHFQVPDQ-ENFTHRNGRTAR 316
WP_084006160 244 ISAFFKEE--ELEHQMFHGGMEQIDRERALVKFRNDTSLILITTDLAARGLDIPMIQHVIHYQLPPKEDAFIHRNGRTAR 321
WP_014021526 247 ISLLLTDF--GFEHVLLHGGMEQIDREKNLIKFRSGTHSLLIATDLASRGLDIPEIKHIVHYQLPPKKDAFVHRNGRTAR 324
WP_062405556 453 AGRDGLAVTFAEMRDRRKIGDIESYTRQP-FKAEVIPGLEpkmrmpearkpmgrggdrfggernyanagggfrggrpapg 531
WP_052473039 339 AKRGATAILLVAPREMAMLHSIEHATQQV-IAPQVLP--Eryr------------------------------------- 378
WP_011980405 338 AGREGIAITLVSPDEIEQLHDLQKVLGGK-IKEVILPEYApkevkargfllhgpqrrkkstsvkresasrpgvk------ 410
WP_102243292 353 RQAEGFAYNLVTPKDMNIITRINEAIKNQsAIRLT--AFDekkfsavkaikakavetkldkkkkqldelkkkvf------ 424
WP_013631280 323 MKAEGLVHLLLSEEEY-----KPEYITDY-TETDFEEk-Elplpsatnwitfyi-------------------------- 369
WP_038451296 343 AGRPGLVVNLVTERDSRLIAALEGNKPPS-LEKKT----Qhqgkprvasktrft-------------------------- 391
WP_044557517 345 GGRKGSVYNFVTSRDLNLIARINKSIKEQsLLKLT--TINtkmqrdltkkkatrasaakvpvkkvtkkrpqvgrknspry 422
WP_062542009 317 MNAKGTSYLLLQPGEK------PPYLPKI-PPLENLPa-Kavlpppspwetiyisagkkdkvnkvdivgwmlqkggldks 388
WP_084006160 322 MNETGNAYMLLADDDE-----IPEYVNTY-PRHFDIPq-Dapkpaptqwetiyv-------------------------- 368
WP_014021526 325 MMAEGQSYLLLAHEET-----FPEYVDNN-LPEYQLPq-Eiktpesspltciyl-------------------------- 371
WP_062405556 532 grdfggnrdrdgggfDNraprghfrdeqprfeqrseprfdarkdggrfdaprgdhrggdRFE 593
WP_052473039     --------------------------------------------------------------    
WP_011980405 411 --------------------------kgkkrkttkrdgfkafdaakktkeaktpnkkrgRGK 446
WP_102243292 425 -------------------------tkkkpgekrhaktvknantprykrtgkpaakkttRSS 461
WP_013631280 370 --aagkkdkiskmdiAGlfyk----------------------------------kaflERD 395
WP_038451296 392 ---------------------------------------------dakgkagyaksmgvKKR 408
WP_044557517 423 kksk---------------------------------------------------------- 426
WP_062542009 389 elgrielldnaafvavskkklekavqllqneklkgkkvkieqas------------------ 432
WP_084006160 369 --sagkknkinkidlVGlfik----------------------------------kgnlDKN 394
WP_014021526 372 --svgkknkvskgdiVGfftk----------------------------------rgglKGS 397
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap