Conserved Protein Domain Family
TYA

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pfam01021: TYA 
Ty transposon capsid protein
Ty are yeast transposons. A 5.7kb transcript codes for p3 a fusion protein of TYA and TYB. The TYA protein is analogous to the gag protein of retroviruses. TYA a is cleaved to form 46kd protein which can form mature virion like particles. This entry corresponds to the capsid protein from Ty1 and Ty2 transposons.
Statistics
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PSSM-Id: 425992
Aligned: 6 rows
Threshold Bit Score: 609.651
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q03964     17 ACASVTSKEVQTTQDPLDISASKTEECEKVFTQANSQQPTTPPSAAVPENHHHASPQAAQVPLPQNGPYPQQRMMTPQQA 96   Saccharomyces cer...
Q12112     17 ACASVTSKEVHTNQDPLDVSASKIQEYDKASTKANSQQTTTPASSAVPENPHHASPQTAQSHSPQNGPYQQQCMMTQNQA 96   Saccharomyces cer...
O74302     17 ACASVTSKEVHTNQDPLDVSASKTEECEKASTKANSQQTTTPASSAVPENPHHASPQPASVPPPQNGPYPQQCMMTQNQA 96   Saccharomyces cer...
SCW01709   17 ACASVTSKEVHTNQDPLDVSASKINEYDKLSTKANSQQETTPVPTDVSENIHHASPHTAQVPLPQNGPYSQQCMMTQNQA 96  
EJT41944   17 ACASVTSRGV---QDPLVAPAFQLQESDEDSNKVKSQSTTTPGSSAVPDNHPRAFPQPAS--------HSQRSMTTPSQT 85  
P0C2J3     17 AYASVTSKEVPSNQDPLAVSASNLPEFDRDSTKVNSQQETTPGTSAVPENHHHVSPQPASVPPPQNGQYQQHGMMTPNKA 96   Saccharomyces cer...
Q03964     97 NISGWPVYGHPSLMPYPPYQMSPMYAPPGAQSQFTQYPQYVGTHLNTPSPESGNSFPDSSSAKSNMTSTNQHVRPPPILT 176  Saccharomyces cer...
Q12112     97 NPSGWSFYGRPSMIPYTPYQMSPMYFPPGPHSQFPQYPSSVGTPLSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPMLT 176  Saccharomyces cer...
O74302     97 NPSGWSFYGHPSMIPYTPYQMSPMYFPPGPQSQFPQYPSSVGTPLSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPMLT 176  Saccharomyces cer...
SCW01709   97 NPSGWPAYGHPYTMPYTPYQMSPMYYPPGPQPQYPQYTSTTGTPLSATPPEPSNTLTKPPSTKSDVTPVNKSVRPPPILT 176 
EJT41944   86 TTFGRTFYGHPSTMPYSPYQMSPMYFPSGTQALFLQYPPSFGSPLNAPSPE------------SDTTLTYNPVRPPPILT 153 
P0C2J3     97 MASNWAHYQQPSMMTCSHYQTSPAYYQPDPHYPLPQYIP----PLSTSSPDPIDLKNQHSEIPQAKTKVGNNVLPPHTLT 172  Saccharomyces cer...
Q03964    177 SPNDFLNWVKIYIKFLQNSNLGDIIPTATRKAVRQMTDDELTFLCHTFQLFALSQFLPTWVKDILSVDYTDIMKILSKSI 256  Saccharomyces cer...
Q12112    177 SPNDFLNWVKTYIKFLQNSNLGDIIPTATRKAVRQMTDDELTFLCHTFQLFAPSQFLPTWVKDILSADYTDIMKILSKSI 256  Saccharomyces cer...
O74302    177 SPNDFPNWVKTYIKFLQNSNLGGIIPTVNGKPVRQITDDELTFLYNTFQIFAPSQFLPTWVKDILSVDYTDIMKILSKSI 256  Saccharomyces cer...
SCW01709  177 SSNDFLNWIKTYVKFLQNSNLGDIIPTTDGRPIRQITYDEHTFLYNTFQTFAPSHFLPTWVKDILSVDYTDIMKVLSKSF 256 
EJT41944  154 SAKDFLNWVRFYIKFLQNSNLGDILPSATEKAVRQMTNEEHAFLYNTFRVFAPLQFLPIWVKQILYNDYTDIMKILSKSM 233 
P0C2J3    173 SEENFSTWVKFYIRFLKNSNLGDIIPNDQGEIKRQMTYEEHAYIYNTFQAFAPFHLLPTWVKQILEINYADILTVLCKSV 252  Saccharomyces cer...
Q03964    257 NKMQSDTQEVNDITTLANLHYNGSTPADAFEAEVTNILDRLKNNGIPINNKVACQFIMRGLSGEYKFLRYARHRYIHMTV 336  Saccharomyces cer...
Q12112    257 NKMQSDTQEVNDITTLATLHYNGSTPADAFEAEVTNILDRLNNNGIPINNKVACQFIMRGLSGEYKFLRYARHRYIHMTV 336  Saccharomyces cer...
O74302    257 EKMQSDTQEANDIVTLANLQYNGSTPADAFETKVTNIIDRLNNNGIHINNKVACQLIMRGLSGEYKFLRYTRHRHLNMTV 336  Saccharomyces cer...
SCW01709  257 EKMQSDNQDVHDLITITNLRYNGSTPAGEFETKITNTIERLNNNGVSINDKLACKLIMRGLSGEYRFLRYTRHRHQNMTV 336 
EJT41944  234 ERMQFDTQEVTDLVALTTLKYNGSTPVDTFETTVTNIIERLNNSGININDKVACQLILKGLSGEYKYVRSTSHCRKNRTV 313 
P0C2J3    253 SKMQTNNQELKDWIALANLEYDGSTSADTFEITVSTIIQRLKENNINVSDRLACQLILKGLSGDFKYLRNQYRTKTNMKL 332  Saccharomyces cer...
Q03964    337 ADLFSDIHSMYEEQQESKRNKSTYRRSPSDEKKDSRTYTNTTKPKSITRNSQKPNNSQSRTARA 400  Saccharomyces cerevisiae S288C
Q12112    337 ADLFSDIHSMYEEQQESKRNKSTYRRNPSDEKKDSRTYTNTTKPKSITRNSQKPNNSQSRTARA 400  Saccharomyces cerevisiae S288C
O74302    337 AELFLDIHAIYEEQQGSRNSKPNYRRNPSDEKNDSRSYTNTTKPKVIARNPQKTNNSKSKTARA 400  Saccharomyces cerevisiae S288C
SCW01709  337 AELFLDIHAIYEEQQESERRKPTYPRIPKDDKNISRVSPNINKAKTVTRNPQKASNSKSRTVKT 400 
EJT41944  314 SDLFSDIHAVYDNQQYSKQSELTYTKNRSHCKNASRSTSTTPNTNVVTRSSRTTNTSKSRKTKA 377 
P0C2J3    333 SQLFAEIQLIYDENKIMNLNKPSQYKQHSEYKNVSRTSPNTTNTKVTTRNYHRTNSSKPRAAKA 396  Saccharomyces cerevisiae S288C
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