1JAT,5AIT,2R0J


Conserved Protein Domain Family
UBCc_UBE2N

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cd23813: UBCc_UBE2N 
Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin-conjugating enzyme E2 N and related proteins
The E2N subfamily includes mammalian ubiquitin-conjugating enzymes E2 N (UBE2N/UBCH13/UBC13/BLU), yeast ubiquitin-conjugating enzyme E2 13 (UBC13), and plant ubiquitin-conjugating enzyme E2 35-36 (UBC35/UBC13A/UBG13A, UBC36/UBC13B/UBG13B), which function as ubiquitin-conjugating enzymes (EC 2.3.2.23). UBE2N, also called Bendless-like ubiquitin-conjugating enzyme, forms heterodimers with UBE2V1 and UBE2V2, respectively. The UBE2V1/UBE2N and UBE2V2/UBE2N heterodimers catalyze the synthesis of non-canonical 'Lys-63'-linked polyubiquitin chains. This type of polyubiquitination does not lead to protein degradation by the proteasome. UBE2N also plays a role in the control of progress through the cell cycle and differentiation, as well as in the error-free DNA repair pathway, and contributes to the survival of cells after DNA damage. Saccharomyces cerevisiae UBC13 has a role in the DNA error-free post-replication repair (PRR) pathway. The UBC13/MMS2 heterodimer catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. Arabidopsis thaliana UBC35 and UBC36 catalyze the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. They mediate transcriptional activation of target genes. They are required for post-replication repair of UV-damaged DNA and for adapting root developmental programs to suboptimal availability of iron.
Statistics
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PSSM-Id: 467433
Aligned: 55 rows
Threshold Bit Score: 269.066
Created: 10-Aug-2017
Updated: 27-Apr-2023
Structure
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Program:
Drawing:
Aligned Rows:
 
active siteUBE2V2RING
Conserved site include 1 residue -Click on image for an interactive view with Cn3D
Feature 1: active site cysteine [active site], 1 residue position
Conserved feature residue pattern:CClick to see conserved feature residue pattern help
Evidence:
  • Comment:forms a thioester with ubiquitin or ubiquitin-like proteins
  • Comment:serves as the point of attachment of ubiquitin prior to transfer to cellular target
  • Citation:PMID 9497353
  • Citation:PMID 9705497

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
1JAT_A         6 LPKRIIKETEKLVSDPV-PGITAEPHDDNlRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDR 84  baker's yeast
5AIT_B         6 LPRRIIKETQRLLAEPV-PGIKAEPDESNaRYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDK 84  human
2R0J_A         2 IPRRITKETQNLANEPP-PGIMAVPVPENyRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK 80  Plasmodium falc...
CAK74940       5 PTPRIIKETQNLAKDKV-QGIEVTPDPGNfKHFFVIISGPPNTPYEGGVFDVELLLPDDYPMSPPKCVFNTKIYHPNIDN 83  Paramecium tetr...
EDQ91873       3 LPKRILKETENLRRESDeNGITAAPHPNNpRHFLITLRGPSDSPYEGGVFNLELFLPADYPMAPPKVRFLTRIYHPNIDK 82  Monosiga brevic...
EER16497       3 ITKRIEKETQKLKEDPP-PGLSAVPDPSNlRYFHIELEGPQGTPYENGIYKLEMFLPEGYPMEPPKVRFLTKIYHPNIDK 81  Perkinsus marin...
CDJ39228       4 VPKRIQKETHNLASEPP-PGIEAAPDPSNyRYFKIIMTGPAGTPYEGGRYRLELFLPEQYPMEPPKVRFLTKIYHPNIDA 82  Eimeria tenella
XP_009496974   4 NTRRIITETTRLAKEPI-EGITVTPRGDNfRHFDVIIEGPPQTPYEGGRFRLELFLPENYPLSPMKILFSTPIYHPNINR 82  Fonticula alba
GBG31843       7 LPRRIVKETQRLQAEPV-AGIQCEPFPENpRHFKVVLSGPSETPYEGGVFHLELFLPADYPMAPPKVRMLTKLYHPNFDL 85  Hondaea ferment...
KAA6396991    71 DGRNYGMEIRRFNEDKP-VGINIRPHEENfRYIDATITGPPGTPYEGGTFKLEIFMDEQYPMEAPKCRFMTRIYHPNIDR 149 Streblomastix s...
Feature 1            #                                                             
1JAT_A        85 LGRICLDVLKTN-WSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIknEQGAKAKAREWTKLY 149 baker's yeast
5AIT_B        85 LGRIKLDILADK-WSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKtnEAQAIETARAWTRLY 149 human
2R0J_A        81 LGRICLDILKDK-WSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKqdKNDAEHVARQWNKIY 145 Plasmodium falciparum 3D7
CAK74940      84 LGRICLDVLKDK-WSPALQIRSILLSIQVLLSSPNPDDPLNNDAANLWKtnEAQALMKARDFTLKY 148 Paramecium tetraurelia
EDQ91873      83 IGRICLDVIKDK-WSPALQIRTVLLSIQALLSAPEPDDPLDTTIAELWQtnNAQALANAREWTRRY 147 Monosiga brevicollis MX1
EER16497      82 LGRICLDILKDK-WSPALQMRTVLLSIQALLSAPEPDDPLDTGVAEHFKhnRAEADSIARSWNQIY 146 Perkinsus marinus ATCC 50983
CDJ39228      83 LGRICLDILKDK-WSPALQIRTVLLSVQALLSAPEPDDPLDTRVADHFKndRQAAEERARQWREMY 147 Eimeria tenella
XP_009496974  83 LGKICLDILDSK-WTPALRISSVLLSIQQLLSSPNPDDPLDNTVAQHWRenLEDAHKTAREWTNKH 147 Fonticula alba
GBG31843      86 IGRICLDILKDK-WSPALQIRTVLLSIQALLSTPEPDDPLDPKIAEHWKrdREDAEETAREYTRKY 150 Hondaea fermentalgiana
KAA6396991   150 FGRICLDILKEKaWSPALQIRSVLLSIQCLMQDWIIDDPLDPAVANHFRtdLKGAIAKAAQWTRQY 215 Streblomastix strix

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