1PUJ


Conserved Protein Domain Family
GTPase_YlqF
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TIGR03596: GTPase_YlqF 
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ribosome biogenesis GTP-binding protein YlqF
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. [Protein synthesis, Other]
Links
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Statistics
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PSSM-Id: 274669
Aligned: 72 rows
Threshold Bit Score: 240.874
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
1PUJ_A         3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILK--NKPRIMLLNKADKADAAVTQQWKEHFEnQGI 80  Bacillus subtil...
WP_011076879   7 INWFIGHMKRTVDILESKKKNIDFVIEVVDARLPYGSSNLELLSVFE--NKPIIKIALKSDLVKKDHYQN---------- 74  Mycoplasma pene...
WP_011113881   6 INWFPGHMKKTLDDINKIKKHIDLVIQVLDARAINLTSNPDLLEIFK--QKKIINVALKSDLADLSYQ------YD---- 73  Mycoplasma gall...
WP_006688464   8 INWFPGHMKKATDEILKNLKNVDFFIQLVDARCPLTSSNIELLKEVS--SKPVINLANKADLSD------WKKNFDn--- 76  Ureaplasma parvum
GAK74146       4 FNWFPGHMKKTFDQIKNNLSLVDIVLVILDARIPLSSLNSQIFSLINqrQKPLLILLNKFSLTDPCKINNFIANYHkKQI 83  'Chrysanthemum ...
WP_012498193   2 IHWFPGHMAKEFRLLKDKQKLFDLFIIIIDSRIPISSFNNEIYKIAQ--HRPILFVFNKIDKTSIAELMPIVKRYEdKG- 78  Mycoplasma arth...
WP_013456553  11 INWYPGHMAKGMREIKENASLADVFIIVLDARCPISSYNEDFDSISP--SKPRLFIITKSDLMDVSKKATIEKRFG--SS 86  Mycoplasma bovis
WP_020003173  14 INWYPGHMAKSFKELKELASLANLFIIVLDARCPISSYNSDFDLISP--QKPRLYIINKSDLMDKAKKDQINNFYKdK-- 89  Mycoplasma
WP_010925110  18 INWFPGHMAKGMREIEEKAVVADLFVILLDVRAPLSCYNKSFDKIAP--NKPRLFVFSKIDLGDKDKYNKIKEHFG-SNK 94  Mycoplasma pulm...
WP_011206131   3 INWFPGHMAKSINDIENKARIADLFILIVDGRCPISSLNENFLQIAK--QKMTLVIVTKIDLADKNKFTKIKKFFTdKKF 80  Mycoplasma hyop...

1PUJ_A        81 RSLSINSVNGQGL-NQIVPASKEILQEKFDRMRAKGVK-PRA-IRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTS 157 Bacillus subtil...
WP_011076879  75 GFFYASIKNPADR-KKIINYIDSCLKEKKDRLIKKGLR-NPT-FIGIVVGLPNIGKSSLINYLSNKKSLNVENRPGVTRK 151 Mycoplasma pene...
WP_011113881  74 PETIVTNIRDHQFsNFLLNKLHQILSDKIKRLQAKGLV-TPH-FNIMVIGLPNIGKSSLINKLIKKNHNKVENKAGVTKR 151 Mycoplasma gall...
WP_006688464  77 NFLLISTKKRNDK-NKIIQHLYQLFDQKIKIYQKKGLI-NPK-FVGMIIGLPNIGKSSLINFLAPKKVLKVENRPGVTKT 153 Ureaplasma parvum
GAK74146      84 PVLTIDAIKSPKL-QEIYQKALTTIKAKNPLFKSRRIAtQTPnIKAMIVGTPNVGKSTLINSFAQKKVLKTANLAGTTKR 162 'Chrysanthemum ...
WP_012498193  79 EVILTNLKSPKAY-KQINSSLNAHYLKLKAKNDAKGKL-TPP-LKCVVLGVPNVGKSTFINLMAKSRVAKVGATAGITRS 155 Mycoplasma arth...
WP_013456553  87 MLLWLDLRNPKSK-NIIINKLKKITESKVAKDKQKGLI-NSR-IKAFVMGIPNAGKSTLINLVSNKKSLQVANYPGVTRA 163 Mycoplasma bovis
WP_020003173  90 NLLWVSLRKQSSK-KIIFNKINEIFKDKIKKDKEKGLL-QTR-IKAFVVGIPNSGKSTLINFLSSKNSLKVANMPGVTKA 166 Mycoplasma
WP_010925110  95 NVVFVDLKKPQSR-QIILKKIDYLLKEKVLQEQKKGLN-KPR-LRVFVLGVPNTGKSTFINLLLKEKKVKVGNMPGITRG 171 Mycoplasma pulm...
WP_011206131  81 FILFVNLRDYSAR-LKILSHLNKIFKIKQEKNSTKFF--SPS-LKCFVVGVPNTGKSTLIN-LITKSQLKVGNQPGITRN 155 Mycoplasma hyop...

1PUJ_A       158 QQWVKVGK-ELELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYP-ERLKERYGLDEIPE--- 232 Bacillus subtil...
WP_011076879 152 TENIKISD-SLFLIDTPGVFLKNVTDYQMGLSLALINCVKREVVDKKDLVLFLISKFIENNNlNSFNETLNTNINSN--- 227 Mycoplasma pene...
WP_011113881 152 QTFVKLNK-NFTLYDTPGVLYKRIDDFILGAKLSLLNVINLEVIPMQEVLSFAYSYLNQYYH-NQLLEWAKQEIIPE--- 226 Mycoplasma gall...
WP_006688464 154 QCIRQINQ-HFYLIDTPGIFLKNIQNERDSFVLTLINCVKKEVLELESIVHFAYDFYLKNYR-NELFIKYKMNKVL---- 227 Ureaplasma parvum
GAK74146     163 IQWIDIAKpNIQFLDTPGVLWHNFSDPRISLALALAGCFKDSILPLEKLGIHALCYLIKHYG-TNLQKRFNLDQNDL--- 238 'Chrysanthemum ...
WP_012498193 156 EQWINC-K-NYLLLDTPGLLMPKIASNEIGAKLLITGSIRKESLNLNECLVELYKLVSLKYP-EKIKSLNLEATVLEd-- 230 Mycoplasma arth...
WP_013456553 164 KKWVTV-D-NFFFMDTPGILLPKLTDQYAATKLAMIGSIETNIFPQKFLFTNFLKVLADYYP-KLLIDEFKLTEDDLsdl 240 Mycoplasma bovis
WP_020003173 167 NKWTTK-D-NYFFLDTPGILLPKFKDQEIAIKLIAINSIRNEIFSSKFLASQLFRLLSKYYP-NVLTDLNLKPCYSEe-- 241 Mycoplasma
WP_010925110 172 QQWIKV-D-NILLLDTPGILWPNLDDQDVAIKLSIIGSIRSEIIPSDFLFKNTYKIISKNYP-EILTNMNLFSSNDEn-- 246 Mycoplasma pulm...
WP_011206131 156 NQWISYDK--FLFLDTPGILLPKMNDQILAVKLAIIGLIRWEILNISDLFIEAYKIISEQYP-NFITDLKLKPSLIDs-- 230 Mycoplasma hyop...

1PUJ_A       233 DIAEL---FDAIGEKRGCLMSGGLINYDKTTEVIIRDIRTEKFGRLSFE 278 Bacillus subtilis subsp. subtilis str. 168
WP_011076879 228 NPSEV---LSELLK----VLKIDEDNNQKISVFYDFVFKKtidnpkisl 269 Mycoplasma penetrans
WP_011113881 227 QFHEF---IEQYAHKKGFLNKNNAIDLNATYMNFYQDISLAKIAKVNYE 272 Mycoplasma gallisepticum
WP_006688464 228 NFDDF---IHHICELYNYKLTNNEFDHVRAYENLFNDFSNGLICKVNYD 273 Ureaplasma parvum
GAK74146     239 SNPNL---VDIIGQKRNIYTKNQKVDQSRVYQMLLQEIRQGNLGKLNFD 284 'Chrysanthemum coronarium' phytoplasma
WP_012498193 231 EIFEN---VALYAKNNNLLLKNNVLDTKKAINSLIAYFQE--LSNVMYD 274 Mycoplasma arthritidis
WP_013456553 241 NEVKTyniLTKIAVLKGYVKN-NKYDFNKTYTFFINWVRN--LKGVTFD 286 Mycoplasma bovis
WP_020003173 242 EILAN---FEEYARMHNFYLKEKNLDLNKAYIKFINFVQN--LSGVTYD 285 Mycoplasma
WP_010925110 247 KIHEN---LLKIAEQKNMFIKNGEYDLERARKWFYNFIKNSK--GLTYD 290 Mycoplasma pulmonis
WP_011206131 231 EIEEN---LLILSKNKKFINK-NGLDLPRCRRWFLMHIGKQ---KITLD 272 Mycoplasma hyopneumoniae
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