Conserved Protein Domain Family
LSm2

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cd01725: LSm2 
Like-Sm protein 2
The eukaryotic LSm proteins (LSm2-8 or LSm1-7) assemble into a hetero-heptameric ring around the 3'-terminus uridylation tag of the gamma-methyl triphosphate (gamma-m-P3) capped U6 snRNA. LSm2-8 form the core of the snRNP particle that, in turn, assembles with other components onto the pre-mRNA to form the spliceosome which is responsible for the excision of introns and the ligation of exons. LSm1-7 is involved in recognition of the 3' uridylation tag and recruitment of the decapping machinery. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet.
Statistics
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PSSM-Id: 212472
Aligned: 39 rows
Threshold Bit Score: 109.6
Created: 10-May-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:putative RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:Residues within loops 3 and 5 of the SM1 motif bind RNA

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                         # #                                #           
Q9Y333         2 LFYSFFKSLV--GKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHML-----SVKNCFIRGSVVRYVQLPA 74  human
O94408         2 LFYSFFKTLI--DTEVTVELKNDMSIRGILKSVDQFLNVKLENISVVDASKYPHMA-----AVKDLFIRGSVVRYVHMSS 74  Schizosaccharom...
EAL21847       2 LIFSFFKTLT--DQVITVELKNDLSITGTLKSVDQFLNIRLDNISVEDPERHPHMM-----AVKNCFIRGSVVRYVRMAA 74  Cryptococcus ne...
EAA16362      23 LFFTFFQQLAekNQHITIELKNDLQISGVLHSVDQYLNIKLTNISVNNPEKYPHLL-----SIKSCFVRGSVVRYVFLPS 97  Plasmodium yoel...
EAK90680       6 LFFNFLQTLIekQVVVTVELKNDLQITGTLHSIDQYLNIKLNNTTVNQNESFIHLG-----SLKNCFIRGSVVRYIFFPP 80  Cryptosporidium...
EDU50950       2 LFFSFFKTLV--EHEITVELKNEVQIRGTLKSVDQYLNIKLDNAEAVDELRWPHLC-----STKDMFIRGSVVRYVHLPS 74  Pyrenophora tri...
EEE30274       1 MFFSFFQTLVerQTQIMVELKNDLQITGSLHSVDQFLNIKLNNVSVADPERCPHLL-----SVKNCFIRGSAVRYVHLPP 75  Toxoplasma gond...
XP_002780629   2 LFFDFFQSLVdsGAQVTVEMKNDVQITGTLQAVDQYFNVKLKNISINNPEQYPHLL-----SLRNCFIRGSVVRYIHLPD 76  Perkinsus marin...
XP_952975     10 NCFSYFIIFF--KVWSRRMRRNDLQISGKLHSVDQYLNIKLTNVTANDTQRYPHLVliyklSVVNCFVRGSVVRYVFFNP 87  Theileria annul...
XP_001442770   5 FFQTYFRGLIerCVSVTIELKNGLQIQGQITYVDDNLNFNLVDPEVSDPLKQPQLM-----TLRNSFIRGSTVKYVHIPQ 79  Paramecium tetr...
Feature 1                        
Q9Y333        75 DEVDTQLLQDAARKEA 90  human
O94408        75 AYVDTILLADACRRDL 90  Schizosaccharomyces pombe 972h-
EAL21847      75 RSVDTTLLEDATRREA 90  Cryptococcus neoformans var. neoformans B-3501A
EAA16362      98 NEVNVEKLRHMCRQEA 113 Plasmodium yoelii yoelii
EAK90680      81 SEVDIELLQKACRKEL 96  Cryptosporidium parvum Iowa II
EDU50950      75 GAVDTALLEDATRREA 90  Pyrenophora tritici-repentis Pt-1C-BFP
EEE30274      76 SAVDVSQLQDMCRRES 91  Toxoplasma gondii VEG
XP_002780629  77 MYTQGLTDQCRKELAQ 92  Perkinsus marinus ATCC 50983
XP_952975     88 SDINTEELQELCRRQA 103 Theileria annulata strain Ankara
XP_001442770  80 EELQEEVLISACKNEV 95  Paramecium tetraurelia strain d4-2

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