1J1J,3AXJ,4DG7,1KEY,3PJA,3PJA


Conserved Protein Domain Family
Translin-like

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cd14805: Translin-like 
Click on image for an interactive view with Cn3D
Translin and translin-associated factor-X (TRAX)
Translin (also known as TB-RBP), and its binding partner protein TRAX (translin-associated factor-X) are a paralogous pair of conserved proteins, and oligomeric complexes of TRAX and translin are known as C3PO proteins (for component 3 promoter of RNA-induced silencing complex or RISC). The Translin-Trax complex enhances the removal of the passenger strand in RNAi and the formation of active RISC. Translin and Trax participate in a variety of nucleic acid metabolism pathways in addition to RNAi and have been implicated in a wide range of biological activities, including mRNA processing, cell growth regulation, spermatogenesis, neuronal development/function, genome stability regulation and carcinogenesis; however, their precise role in some of the processes remains unclear. It has been shown that Trax subunit, but not Translin, possesses a Glu-Glu-Asp catalytic center with the capacity to digest RNA as well as DNA; this catalytic activity is required for passenger-strand removal and RISC activation in RNAi. In Archaeoglobus fulgidus, Trax-like-subunits assemble into an octameric structure, highly similar to human C3PO; its complex with duplex RNA reveals that the octamer entirely encapsulates a single 13-base-pair RNA duplex inside a large inner cavity.
Statistics
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PSSM-Id: 271348
Aligned: 6 rows
Threshold Bit Score: 275.531
Created: 21-Dec-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
heterodimer
Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:heterodimer interface [polypeptide binding site]
Evidence:
  • Structure:3AXJ: Drosophila melanogaster translin-TRAX interatcions; contacts at 4.0A
  • Structure:1KEY: Mus musculus translin-TRAX interactions; contacts at 4.0A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1     ##  #  ##                                                                   ##  
1J1J_A     22 LQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQgvhqgagfqdipkrcLKAREHFGTVKT-HLTSLKtkfpaeqyYRFH 100 human
3AXJ_B     37 YSNELIXKHDRHERIVKLSRDITIESKRIIFLLHsidsrkq--nkekvlEEARQRLNKLIAvNFRAVAlelrdqdvYQFR 114 fruit fly
4DG7_A     33 YQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQiihsdls--qisaacGLARKQVELCAQ-KYQKLAelvpagqyYRYS 109 fruit fly
1KEY_A     17 LQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQgvhqgtgfqdipkrcLKAREHFSTVKT-HLTSLKtkfpaeqyYRFH 95  house mouse
3PJA_A     10 LQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQgvhqgagfqdipkrcLKAREHFGTVKT-HLTSLKtkfpaeqyYRFH 88  human
3PJA_L     42 FQQELDARHDKYERLVKLSRDITVESKRTIFLLHritsap---dmedilTESEIKLDGVRQ-KIFQVAqelsgedmHQFH 117 human
Feature 1                                                                                     
1J1J_A    101 EHWRFVLQRLVFLAAFVVYletetlvtreavteil--------------------------------giepdrekgfhld 148 human
3AXJ_B    115 SSYSPGLQEFIQAYTYXEYlchedaegenetksvsdwqaiqavxqyveessqpkeeptegedvqaiaqvespkkfqffvd 194 fruit fly
4DG7_A    110 DHWTFITQRLIFIIALVIYleagflvtretvaeml--------------------------------glkisqsegfhld 157 fruit fly
1KEY_A     96 EHWRFVLQRLVFLAAFVVYletetlvtreavteil--------------------------------giepdrekgfhld 143 house mouse
3PJA_A     89 EHWRFVLQRLVFLAAFVVYletetlvtreavteil--------------------------------giepdrekgfhld 136 human
3PJA_L    118 RAITTGLQEYVEAVSFQHFiktrslismdeinkqlifttedngk--------------enktpssdaqdkqfgtwrlrvt 183 human
Feature 1        ##                               #  ##  #  ##                         
1J1J_A    149 vedYLSGVLILASELSRLSVNSVtagdysrPLHISTFINELDSGFRLLnlkn-dslRKRYDGLKYDVKKVEEV 220 human
3AXJ_B    195 pteYILGLSDLTGELXRRCINSLgsgdtdtCLDTCKALQHFYSGYISLncqrarelWRKITTXKQSVLKAENV 267 fruit fly
4DG7_A    158 vedYLLGILQLASELSRFATNSVtmgdyerPLNISHFIGDLNTGFRLLnlkn-dglRKRFDALKYDVKKIEEV 229 fruit fly
1KEY_A    144 vedYLSGVLILASELSRLSVNSVtagdysrPLHISTFINELDSGFRLLnlkn-dslRKRYDGLKYDVKKVEEV 215 house mouse
3PJA_A    137 vedYLSGVLILASELSRLSVNSVtagdysrPLHISTFINELDSGFRLLnlkn-dslRKRYDGLKYDVKKVEEV 208 human
3PJA_L    184 pvdYLLGVADLTGELMRMCINSVgngdidtPFEVSQFLRQVYDGFSFIgntgpyevSKKLYTLKQSLAKVENA 256 human

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