1DFV,3U9P,2K23,4GH7,1X8U,1X71


Conserved Protein Domain Family
lipocalin_2-like

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cd19457: lipocalin_2-like 
lipocalin 2 and similar proteins
Lipocalin-2 (LCN2, also known as siderocalin, uterocalin, oncogene 24p3, and neutrophil gelatinase-associated lipocalin) is expressed in renal, endothelial, liver, smooth muscle cells, cardiomyocytes, in various populations of immune cells and dendritic cells. Roles ascribed to LCN2, include chemotactic and bacteriostatic effects, and iron trafficking. LCN2 can also act as a growth factor. It plays an key role in the pathophysiology of renal and cardiovascular diseases, and is involved in various deleterious processes, such as inflammation and fibrosis. It is used as a renal injury biomarker. This subgroup belongs to the lipocalin/cytosolic fatty-acid binding protein family which have a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.
Statistics
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PSSM-Id: 381232
Aligned: 13 rows
Threshold Bit Score: 308.531
Created: 13-Mar-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ligand binding
Conserved site includes 31 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding cavity [chemical binding site]
Evidence:
  • Comment:hydrophobic cavity binds different hydrophobic ligands; ligands are bound within the beta-barrel in a central internal water-filled cavity lined with polar and hydrophobic amino acids
  • Comment:based on human lipocalin 2 and on other lipocalin/cytosolic fatty-acid binding protein family members with structure
  • Structure:1X8U; Homo sapiens lipocalin 2 bound with bacterial soluble siderophore carboxymycobactin, contacts 4A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                            #   # #      ##            # # #       # # # ###        #
1DFV_B      4 TSDLIPAPPLSKVPLQqnFQDNQFQGKWYVVGLAGNAILREDk--dPQKMYATIYELKEDKSYNVTSVLFR--KKKCDYW 79  human
3U9P_C      6 TQNLIPAPSLLTVPLQpdFRSDQFRGRWYVVGLAGNAVQKKTe--gSFTMYSTIYELQENNSYNVTSILVRdqDQGCRYW 83  house mouse
2K23_A      4 TQNLIPAPPLISVPLQpgFWTERFQGRWFVVGLAGNAVQKERq--sRFTMYSTIYELQEDNSYNVTSILVR--GQGCRYW 79  Norway rat
4GH7_A      4 TSDLIPAPPLSKVPLQqnFQDNQFHGKWYVVGKAGNHDLREDk--dPRKMQATIYELKEDKSYNVTNVRFV--HKKCNYR 79  human
1X8U_C      4 TSDLIPAPPLSKVPLQqnFQDNQFQGKWYVVGLAGNAILREDk--dPQKMYATIYELKEDKSYNVTSVLFR--KKKCDYW 79  human
1X71_A      4 TSDLIPAPPLSKVPLQqnFQDNQFQGKWYVVGLAGNAILREDk--dPQKMYATIYELKEDKSYNVTSVLFR--KKKCDYW 79  human
EHA99969   22 FPDMIKIPPLNKVPFQpdFQDDQFQGKWYSLGVADNTIQNGNg--sQLTMYSVNYELQDDHSFNVNTSMLR--DEVCEHS 97  naked mole-rat
EHB02589   24 PSFWIPVPPLSQIPLQpdFQDDRFQGHWYPIGWAQNTIWNESl--sQGLKLNSTYELKDDHSYNVNATWFS--DKGCYHK 99  naked mole-rat
EHB02587   24 PLAVPLNIPMYKVPVQsdFQDDQFQGKWYTIAVADNAIRFENl--tHVHMYSTIFELKDDHSYNVTSRMFS--EEQCELW 99  naked mole-rat
EHA98377   24 FLKLILSPSLSTVPLQ--PHFRDDQGKWYAIGVAESTIQNGTe--sQLEMYSTTFELNDDHSYNVTSIMPK--EDTCDLW 97  naked mole-rat
EHB02588   24 DPGVIPSPPLSKIPLQpnFQYDQFQGKWYPVGWAQNTPWNESl--sRTALYSISYKLIDDNSYNVTCAWLS--TRGCVHI 99  naked mole-rat
EHB10111   24 SPTLLPSPPLSKIPVQ--PDFRDDKGKWYTIATADNRILNRSe--kEINMSSIIYELEYDHSYIANSTLLR--GQVCEHF 97  naked mole-rat
EHB10109   24 PPTLIPEPPLSKIPLQpdFQDDQFQGKWFGIGIAGNSIWKGSrssyEYFMYSNTYQLKDDDSYNVTMNIFR--DDECVQW 101 naked mole-rat
Feature 1      # #        # #           # # #        # # # #      ### # #                     
1DFV_B     80 IRTFVPGCQPGEFTLGNIKSYpGLTSYLVRVVSTNYNQHAMVFFKKVSQNREYFKITLYGRTK-------------ELTS 146 human
3U9P_C     84 IRTFVPSSRAGQFTLGNMHRYpQVQSYNVQVATTDYNQFAMVFFRKTSENKQYFKITLYGRTK-------------ELSP 150 house mouse
2K23_A     80 IRTFVPSSRPGQFTLGNIHSYpQIQSYDVQVADTDYDQFAMVFFQKTSENKQYFKVTLYGRTK-------------GLSD 146 Norway rat
4GH7_A     80 IWTFVPGSQPGEFTLGNIKSWpGLTSWLVRVVSTNYNQHAMVFFKRVYQNRELFEITLYGRTK-------------ELTN 146 human
1X8U_C     80 IRTFVPGSQPGEFTLGNIKSYpGLTSYLVRVVSTNYNQHAMVFFKKVSQNREYFKITLYGRTK-------------ELTS 146 human
1X71_A     80 IRTFVPGSQPGEFTLGNIKSYpGLTSYLVRVVSTNYNQHAMVFFKKVSQNREYFKITLYGRTK-------------ELTS 146 human
EHA99969   98 VETLFPGFQPGQFTLGNLTSYrGVMSYIVRVAATNYSHFAMVYVEKIVRFKWYYKMTLYGRTK-------------KLRH 164 naked mole-rat
EHB02589  100 SSTIVPSDQPGQFTLGNLAGFeGLQHYTMRVVATDYNQFAMVFYKLIFNNTEYFELILYGELSphplmdllpgrakELSP 179 naked mole-rat
EHB02587  100 IRTFVPTVLPGQFTLENITRFnQIQNYTVRVTATDYDQFATMFLKTTYKSRVYIEIILLGRTK-------------ELSL 166 naked mole-rat
EHA98377   98 IRTLSPSVRPGQFTLSNMQDYpEIRNYTVKVVATNYKQFGVVFLKMVLTNSVHIEITLYGRAK-------------ELSP 164 naked mole-rat
EHB02588  100 SATIVPSDQPSQFILENITSYdGLQNLTITVVETDYNQFAIVIFNLTIKTRVHFEIILYGRTK-------------ELIP 166 naked mole-rat
EHB10111   98 IRTFVPSVQCGQFTMGNMKRHhGVQSYTMRVAATNYNEFAVVCIKQIIRNRVYFRMDLYARTT-------------EVSP 164 naked mole-rat
EHB10109  102 NQRFVPYVERGQFSLDNETLSdGLDIYTVRVTATDYNQFAMMYAMIKFENMVYFQTKLHGRTK-------------KLSR 168 naked mole-rat
Feature 1                                   
1DFV_B    147 ELKENFIRFSKSLGLPENHIVFPVPIDQCI 176 human
3U9P_C    151 ELKERFTRFAKSLGLKDDNIIFSVPTDQCI 180 house mouse
2K23_A    147 ELKERFVSFAKSLGLKDNNIVFSVPTDQCI 176 Norway rat
4GH7_A    147 ELKENFIRFSKSLGLPENHIVFPVPIDQCI 176 human
1X8U_C    147 ELKENFIRFSKSLGLPENHIVFPVPIDQCI 176 human
1X71_A    147 ELKENFIRFSKSLGLPENHIVFPVPIDQCI 176 human
EHA99969  165 KLKERFIKFTTSLDFTKDNIAFSVPIGNDQ 194 naked mole-rat
EHB02589  180 EVEDHFFNFARSLGLSDDYIFFIEHMGNGR 209 naked mole-rat
EHB02587  167 ELKEGFLNFSKSLGLTEEDIIFTDPIGNVQ 196 naked mole-rat
EHA98377  165 ELKEHFVKFSKSVGLTDDNIIFTDPIEKCI 194 naked mole-rat
EHB02588  167 KVEEQFRKFAKSLDIPDEYIIFTDPLEQQP 196 naked mole-rat
EHB10111  165 ELKEDFVTFAKHLGLRDANIGFTVPMGNGQ 194 naked mole-rat
EHB10109  169 EMKERFMEFSKSLGLIDDNIIFFEPTEKCI 198 naked mole-rat

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